Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99703 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99984 * 3 2 1 5 5 H 1.48503 * 109.47106 * 30.00407 * 3 2 1 6 6 H 1.48501 * 109.46928 * 150.00266 * 3 2 1 7 7 C 1.38815 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99908 * 0.02562 * 7 2 1 10 10 S 1.65600 * 119.99816 * 179.97438 * 9 7 2 11 11 O 1.42092 * 106.40328 * 311.45898 * 10 9 7 12 12 O 1.42102 * 106.40141 * 178.53963 * 10 9 7 13 13 C 1.76202 * 107.21721 * 65.00030 * 10 9 7 14 14 C 1.38225 * 119.95279 * 89.99937 * 13 10 9 15 15 C 1.38440 * 120.04378 * 179.97438 * 14 13 10 16 16 F 1.35095 * 120.02146 * 180.02562 * 15 14 13 17 17 C 1.38596 * 119.95255 * 359.97438 * 15 14 13 18 18 F 1.35096 * 120.04440 * 180.02562 * 17 15 14 19 19 C 1.38602 * 119.91044 * 359.97438 * 17 15 14 20 20 F 1.35107 * 120.01900 * 180.02562 * 19 17 15 21 21 C 1.38221 * 119.95651 * 269.97554 * 13 10 9 22 22 H 0.96997 * 120.00104 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99861 * 0.02562 * 9 7 2 24 24 H 1.07998 * 119.98251 * 359.72590 * 14 13 10 25 25 H 1.07999 * 119.97970 * 0.02562 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 16 2.1538 -3.8221 -0.0029 11 8 3.1360 -3.7174 -1.0243 12 8 1.1743 -4.8511 0.0309 13 6 3.0305 -3.9195 1.5224 14 6 2.4340 -4.5008 2.6255 15 6 3.1213 -4.5788 3.8247 16 9 2.5380 -5.1475 4.9023 17 6 4.4086 -4.0739 3.9185 18 9 5.0813 -4.1494 5.0877 19 6 5.0054 -3.4923 2.8109 20 9 6.2604 -2.9999 2.8998 21 6 4.3141 -3.4149 1.6141 22 1 -0.4850 0.8400 0.0004 23 1 0.3557 -2.3880 -0.0023 24 1 1.4295 -4.8909 2.5530 25 1 4.7785 -2.9610 0.7511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336580743.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -180.800811 kcal Electronic energy + Delta-G solvation = -19777.176918 eV Core-core repulsion = 15854.659261 eV Total energy + Delta-G solvation = -3922.517658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.75805 -49.10880 -48.43484 -38.56649 -36.22265 -34.92000 -34.83968 -31.26759 -30.62538 -30.49284 -24.80739 -23.46276 -23.34562 -19.18020 -18.47798 -18.14839 -17.79852 -17.60732 -16.79512 -16.50060 -15.89158 -15.78469 -15.40810 -14.92150 -14.84218 -14.76452 -14.46959 -14.36509 -13.68059 -12.83387 -12.77655 -12.23683 -12.00611 -11.73604 -11.49404 -11.29630 -11.13645 -11.02480 -10.75632 -10.58027 -10.28540 -10.21957 -9.08808 -8.90006 -8.55243 -6.79540 -4.14334 0.45288 0.82164 1.30840 2.99341 3.05406 3.10259 3.11712 3.36944 3.84644 4.13380 4.14156 4.23433 4.41939 4.58032 4.86778 5.04948 5.14227 5.40061 5.46935 5.79743 5.86604 6.10799 6.62658 6.75959 7.17309 8.37033 8.46475 8.91998 10.33994 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.007172 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.002899 B = 3903.290264 C = 4522.263486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.033 3.967 3 Si 0.927 3.073 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.258 4.258 8 H 0.110 0.890 9 N -0.928 5.928 10 S 2.572 3.428 11 O -0.963 6.963 12 O -0.997 6.997 13 C -0.612 4.612 14 C -0.043 4.043 15 C 0.072 3.928 16 F -0.123 7.123 17 C 0.060 3.940 18 F -0.119 7.119 19 C 0.074 3.926 20 F -0.122 7.122 21 C -0.039 4.039 22 H 0.281 0.719 23 H 0.412 0.588 24 H 0.164 0.836 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -3.159 5.105 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.178 4.178 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.403 4.403 8 H 0.128 0.872 9 N -0.678 5.678 10 S 2.662 3.338 11 O -0.953 6.953 12 O -0.985 6.985 13 C -0.687 4.687 14 C -0.063 4.063 15 C 0.051 3.949 16 F -0.101 7.101 17 C 0.039 3.961 18 F -0.098 7.098 19 C 0.053 3.947 20 F -0.100 7.100 21 C -0.059 4.059 22 H 0.091 0.909 23 H 0.248 0.752 24 H 0.181 0.819 25 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.074 -3.947 4.646 7.932 hybrid contribution 0.466 1.037 1.482 1.868 sum 5.540 -2.909 6.128 8.758 Atomic orbital electron populations 1.69687 1.06255 1.29269 1.44274 1.25428 0.95760 1.00087 0.96545 0.85901 0.79415 0.80335 0.79121 1.19598 1.20388 1.18891 1.19569 0.92679 0.82996 1.45084 0.87221 1.52281 1.17411 1.19722 1.78422 1.09271 0.73236 0.74322 0.76971 1.93472 1.61002 1.86865 1.53953 1.93411 1.59320 1.58100 1.87697 1.32610 1.05864 1.04617 1.25595 1.20899 1.00879 0.95551 0.88931 1.17481 0.90663 1.01149 0.85622 1.91541 1.83478 1.82260 1.52833 1.17697 0.91173 1.04712 0.82546 1.91537 1.79373 1.94351 1.44520 1.17517 0.81861 1.01476 0.93883 1.91549 1.36471 1.85324 1.96680 1.20978 0.92951 0.95650 0.96293 0.90865 0.75189 0.81869 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.40 13.06 55.49 0.72 -19.68 15 2 C 0.03 0.75 5.50 -17.43 -0.10 0.65 15 3 Si 0.93 17.75 29.55 -169.99 -5.02 12.73 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.26 -5.79 9.63 -15.06 -0.15 -5.93 15 8 H 0.11 2.28 7.82 -52.49 -0.41 1.87 15 9 N -0.93 -19.91 5.75 31.50 0.18 -19.73 15 10 S 2.57 51.17 5.70 -107.50 -0.61 50.56 15 11 O -0.96 -21.14 16.98 -57.17 -0.97 -22.11 15 12 O -1.00 -21.29 17.28 -57.17 -0.99 -22.27 15 13 C -0.61 -10.69 5.89 -39.59 -0.23 -10.92 15 14 C -0.04 -0.69 9.50 -39.51 -0.38 -1.07 15 15 C 0.07 1.14 7.31 -39.37 -0.29 0.85 15 16 F -0.12 -1.89 17.18 2.25 0.04 -1.85 15 17 C 0.06 0.96 7.31 -39.31 -0.29 0.67 15 18 F -0.12 -1.89 17.10 2.25 0.04 -1.85 15 19 C 0.07 1.18 7.31 -39.38 -0.29 0.89 15 20 F -0.12 -1.90 17.18 2.25 0.04 -1.86 15 21 C -0.04 -0.64 9.50 -39.52 -0.38 -1.02 15 22 H 0.28 6.30 8.31 -40.82 -0.34 5.96 15 23 H 0.41 8.95 8.02 -34.48 -0.28 8.68 15 24 H 0.16 2.41 7.62 -52.49 -0.40 2.01 15 25 H 0.17 2.54 7.61 -52.49 -0.40 2.14 15 LS Contribution 262.42 15.07 3.95 3.95 Total: -1.00 -26.24 262.42 -5.33 -31.56 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -0.62 Total: 6.41 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.09 Total: -15.87 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.91 Total: -39.41 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.96 Total: -44.38 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.12 Total: -5.56 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 16 Polarization: 51.17 SS G_CDS: -0.61 Total: 50.56 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.24 -5.33 -31.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336580743.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.236 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds