Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99703 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99984 * 3 2 1 5 5 H 1.48503 * 109.47106 * 30.00407 * 3 2 1 6 6 H 1.48501 * 109.46928 * 150.00266 * 3 2 1 7 7 C 1.38815 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99908 * 0.02562 * 7 2 1 10 10 S 1.65600 * 119.99816 * 179.97438 * 9 7 2 11 11 O 1.42092 * 106.40328 * 311.45898 * 10 9 7 12 12 O 1.42102 * 106.40141 * 178.53963 * 10 9 7 13 13 C 1.76202 * 107.21721 * 65.00030 * 10 9 7 14 14 C 1.38225 * 119.95279 * 89.99937 * 13 10 9 15 15 C 1.38440 * 120.04378 * 179.97438 * 14 13 10 16 16 F 1.35095 * 120.02146 * 180.02562 * 15 14 13 17 17 C 1.38596 * 119.95255 * 359.97438 * 15 14 13 18 18 F 1.35096 * 120.04440 * 180.02562 * 17 15 14 19 19 C 1.38602 * 119.91044 * 359.97438 * 17 15 14 20 20 F 1.35107 * 120.01900 * 180.02562 * 19 17 15 21 21 C 1.38221 * 119.95651 * 269.97554 * 13 10 9 22 22 H 0.96997 * 120.00104 * 359.97438 * 1 2 3 23 23 H 0.97004 * 119.99861 * 0.02562 * 9 7 2 24 24 H 1.07998 * 119.98251 * 359.72590 * 14 13 10 25 25 H 1.07999 * 119.97970 * 0.02562 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 16 2.1538 -3.8221 -0.0029 11 8 3.1360 -3.7174 -1.0243 12 8 1.1743 -4.8511 0.0309 13 6 3.0305 -3.9195 1.5224 14 6 2.4340 -4.5008 2.6255 15 6 3.1213 -4.5788 3.8247 16 9 2.5380 -5.1475 4.9023 17 6 4.4086 -4.0739 3.9185 18 9 5.0813 -4.1494 5.0877 19 6 5.0054 -3.4923 2.8109 20 9 6.2604 -2.9999 2.8998 21 6 4.3141 -3.4149 1.6141 22 1 -0.4850 0.8400 0.0004 23 1 0.3557 -2.3880 -0.0023 24 1 1.4295 -4.8909 2.5530 25 1 4.7785 -2.9610 0.7511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336580743.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = -198.033645 kcal Electronic energy + Delta-G solvation = -19777.924190 eV Core-core repulsion = 15854.659261 eV Total energy + Delta-G solvation = -3923.264929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.012 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.05344 -50.38182 -49.72118 -39.95507 -38.06578 -36.69510 -36.50295 -32.87261 -32.04693 -31.84680 -26.44601 -24.90177 -24.68772 -20.72451 -20.10604 -19.64254 -19.15634 -19.00419 -18.27559 -17.97738 -17.35017 -17.20486 -16.67502 -16.44879 -16.20289 -16.09777 -16.07285 -15.65735 -15.30935 -14.24582 -14.15558 -13.82521 -13.45002 -13.17162 -13.07127 -12.98630 -12.86882 -12.80187 -12.35800 -12.18155 -11.89512 -11.81500 -10.47100 -10.21713 -10.18650 -8.35524 -5.87829 -0.94993 -0.50267 -0.35953 1.53240 1.54893 1.60385 1.63742 2.03686 2.29142 2.62478 2.76603 2.82693 2.90859 3.08514 3.21837 3.68585 3.78739 3.80675 4.09990 4.44636 4.51115 4.65195 5.11171 5.28250 5.59582 6.73575 6.91822 7.29276 8.81453 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.007172 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.002899 B = 3903.290264 C = 4522.263486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.305 4.305 8 H 0.117 0.883 9 N -0.958 5.958 10 S 2.656 3.344 11 O -0.979 6.979 12 O -0.999 6.999 13 C -0.624 4.624 14 C -0.035 4.035 15 C 0.077 3.923 16 F -0.116 7.116 17 C 0.073 3.927 18 F -0.115 7.115 19 C 0.077 3.923 20 F -0.117 7.117 21 C -0.034 4.034 22 H 0.275 0.725 23 H 0.410 0.590 24 H 0.180 0.820 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -4.755 6.230 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.214 4.214 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.442 4.442 8 H 0.135 0.865 9 N -0.711 5.711 10 S 2.745 3.255 11 O -0.969 6.969 12 O -0.989 6.989 13 C -0.706 4.706 14 C -0.055 4.055 15 C 0.056 3.944 16 F -0.095 7.095 17 C 0.051 3.949 18 F -0.093 7.093 19 C 0.056 3.944 20 F -0.095 7.095 21 C -0.053 4.053 22 H 0.084 0.916 23 H 0.245 0.755 24 H 0.198 0.802 25 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.666 -5.403 5.727 10.316 hybrid contribution 0.215 1.004 1.291 1.649 sum 6.881 -4.399 7.018 10.768 Atomic orbital electron populations 1.69769 1.07239 1.29028 1.49598 1.25980 0.96293 1.02296 0.96858 0.85154 0.78594 0.77536 0.78647 1.19989 1.20968 1.17907 1.19640 0.92889 0.83362 1.48342 0.86515 1.51562 1.17063 1.19303 1.83134 1.04405 0.72689 0.72656 0.75755 1.93493 1.61813 1.86976 1.54647 1.93454 1.59988 1.57499 1.87945 1.31737 1.06836 1.08124 1.23864 1.21055 1.01441 0.94433 0.88572 1.17320 0.90473 1.01042 0.85583 1.91569 1.83367 1.82089 1.52460 1.17783 0.91059 1.03484 0.82535 1.91561 1.79274 1.94143 1.44315 1.17348 0.82029 1.01456 0.93548 1.91573 1.36085 1.85226 1.96614 1.21097 0.92443 0.94647 0.97159 0.91571 0.75452 0.80221 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.08 13.06 21.65 0.28 -45.79 15 2 C -0.01 -0.49 5.50 84.86 0.47 -0.02 15 3 Si 0.98 37.50 29.55 68.60 2.03 39.53 15 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 7 C -0.31 -13.90 9.63 84.04 0.81 -13.09 15 8 H 0.12 4.87 7.82 -2.91 -0.02 4.84 15 9 N -0.96 -41.12 5.75 -54.27 -0.31 -41.43 15 10 S 2.66 100.14 5.70 -56.49 -0.32 99.81 15 11 O -0.98 -40.80 16.98 -128.00 -2.17 -42.97 15 12 O -1.00 -39.98 17.28 -128.00 -2.21 -42.19 15 13 C -0.62 -19.93 5.89 22.26 0.13 -19.80 15 14 C -0.04 -1.02 9.50 22.31 0.21 -0.81 15 15 C 0.08 2.15 7.31 22.40 0.16 2.32 15 16 F -0.12 -3.17 17.18 44.97 0.77 -2.39 15 17 C 0.07 2.06 7.31 22.44 0.16 2.23 15 18 F -0.11 -3.21 17.10 44.97 0.77 -2.44 15 19 C 0.08 2.20 7.31 22.40 0.16 2.36 15 20 F -0.12 -3.25 17.18 44.97 0.77 -2.48 15 21 C -0.03 -1.00 9.50 22.31 0.21 -0.79 15 22 H 0.27 13.18 8.31 -92.71 -0.77 12.41 15 23 H 0.41 18.22 8.02 -96.74 -0.78 17.44 15 24 H 0.18 4.64 7.62 -2.91 -0.02 4.62 15 25 H 0.18 4.90 7.61 -2.91 -0.02 4.88 15 Total: -1.00 -54.66 262.42 2.44 -52.22 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.51 Total: 15.73 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 2.32 Total: -27.61 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -0.03 Total: -87.22 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -4.39 Total: -85.16 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 2.31 Total: -7.31 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 16 Polarization: 100.14 SS G_CDS: -0.32 Total: 99.81 kcal Total: -54.66 2.44 -52.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336580743.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.813 kcal (2) G-P(sol) polarization free energy of solvation -54.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds