Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46885 * 180.02562 * 12 10 9 14 14 C 1.34231 * 116.99541 * 179.97438 * 13 12 10 15 15 O 1.20819 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99481 * 180.02562 * 14 13 12 17 17 H 1.08994 * 115.55083 * 325.57666 * 16 14 13 18 18 C 1.53000 * 117.49909 * 111.25484 * 16 14 13 19 19 C 1.53002 * 117.49689 * 179.91596 * 16 14 13 20 20 Cl 1.80304 * 117.49838 * 359.97438 * 19 16 14 21 21 Cl 1.80300 * 117.50190 * 144.99522 * 19 16 14 22 22 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 23 23 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 24 24 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 25 25 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 26 26 H 1.09004 * 117.49259 * 214.97109 * 18 16 14 27 27 H 1.08997 * 117.50193 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 8 2.1875 -5.9665 -0.0256 14 6 1.6744 -7.2069 -0.0319 15 8 0.4767 -7.3652 -0.0327 16 6 2.5925 -8.4019 -0.0370 17 1 3.5226 -8.2779 -0.5915 18 6 2.6317 -9.2680 1.2237 19 6 1.9466 -9.7889 -0.0422 20 17 0.1453 -9.8685 -0.0411 21 17 2.7823 -11.0931 -0.9650 22 1 -0.4849 0.8400 0.0004 23 1 0.3535 -2.3907 -0.0068 24 1 0.6169 -4.9255 0.8690 25 1 0.6176 -4.9158 -0.9109 26 1 3.5877 -9.7140 1.4983 27 1 1.9939 -8.9732 2.0569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237800.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -114.208686 kcal Electronic energy + Delta-G solvation = -16931.772857 eV Core-core repulsion = 13549.523035 eV Total energy + Delta-G solvation = -3382.249822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83448 -40.14632 -38.79362 -37.45492 -37.05292 -36.25195 -36.03143 -33.41799 -30.28996 -27.03789 -25.70284 -23.45889 -21.63280 -21.42722 -20.07752 -19.39546 -17.97949 -17.80422 -17.55096 -16.76156 -16.48061 -15.88973 -15.69485 -15.32641 -14.49311 -14.22411 -14.04114 -13.68714 -13.54859 -13.42780 -13.09685 -12.92735 -12.48624 -12.23644 -12.13782 -12.10863 -11.86926 -11.78813 -11.56821 -11.35349 -10.87752 -10.50750 -10.12014 -8.52144 -6.02896 0.00842 0.83706 0.87951 1.38113 1.39236 1.46195 1.56381 1.87237 2.10576 2.30022 2.81906 3.00022 3.13262 3.16740 3.60244 4.04691 4.09112 4.16461 4.22264 4.50388 4.62592 5.24510 5.37009 5.88768 6.44331 6.57590 7.02826 7.39810 7.93139 8.64472 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.048600 B = 0.003146 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.995739 B = 8897.696344 C = 9287.438622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.074 3.926 13 O -0.337 6.337 14 C 0.481 3.519 15 O -0.501 6.501 16 C -0.143 4.143 17 H 0.177 0.823 18 C -0.085 4.085 19 C 0.013 3.987 20 Cl -0.077 7.077 21 Cl -0.075 7.075 22 H 0.281 0.719 23 H 0.400 0.600 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.172 0.828 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -19.615 1.653 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.003 4.003 13 O -0.252 6.252 14 C 0.324 3.676 15 O -0.389 6.389 16 C -0.163 4.163 17 H 0.194 0.806 18 C -0.122 4.122 19 C -0.038 4.038 20 Cl -0.050 7.050 21 Cl -0.048 7.048 22 H 0.090 0.910 23 H 0.234 0.766 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.189 0.811 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.312 -19.586 1.573 19.784 hybrid contribution -0.573 0.857 -0.352 1.089 sum 1.739 -18.728 1.221 18.849 Atomic orbital electron populations 1.69665 1.06953 1.29794 1.49073 1.26139 0.96592 1.02630 0.95649 0.84909 0.77726 0.76090 0.79140 1.19530 1.19451 1.19426 1.19687 0.92964 0.83372 1.50755 0.89698 1.41745 1.09572 1.04219 1.64003 1.20114 0.88085 0.85393 0.84132 1.90528 1.15441 1.87702 1.56786 1.22527 0.90042 0.82264 1.05502 1.86516 1.40689 1.14668 1.83334 1.22789 0.87980 0.84046 0.72815 1.90786 1.16719 1.86347 1.45060 1.22633 1.01131 0.85074 1.07479 0.80591 1.24291 1.04660 0.93619 0.89664 1.26604 0.83276 0.90170 1.03790 1.98797 1.09670 1.98038 1.98493 1.98767 1.77214 1.52280 1.76512 0.90974 0.76564 0.87275 0.87596 0.81077 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.15 13.05 21.67 0.28 -47.87 15 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 15 3 Si 1.00 41.55 29.55 68.60 2.03 43.58 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.34 -18.78 9.68 84.04 0.81 -17.97 15 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 15 9 N -0.56 -28.18 5.29 -306.97 -1.62 -29.81 15 10 C 0.44 20.81 7.86 87.66 0.69 21.49 15 11 O -0.62 -34.42 16.08 15.73 0.25 -34.17 15 12 C 0.07 2.66 5.94 71.24 0.42 3.08 15 13 O -0.34 -11.62 9.76 -45.07 -0.44 -12.06 15 14 C 0.48 13.42 7.74 71.24 0.55 13.97 15 15 O -0.50 -15.49 13.45 21.98 0.30 -15.20 15 16 C -0.14 -2.72 6.14 -11.54 -0.07 -2.79 15 17 H 0.18 2.71 8.14 -2.39 -0.02 2.69 15 18 C -0.09 -1.07 9.92 30.62 0.30 -0.77 15 19 C 0.01 0.24 3.62 30.62 0.11 0.35 15 20 Cl -0.08 -1.78 26.14 -2.72 -0.07 -1.85 15 21 Cl -0.07 -1.22 29.29 -2.72 -0.08 -1.30 15 22 H 0.28 13.83 8.31 -92.71 -0.77 13.05 15 23 H 0.40 19.03 7.90 -92.71 -0.73 18.30 15 24 H 0.11 3.47 8.13 -2.38 -0.02 3.45 15 25 H 0.11 3.45 8.13 -2.39 -0.02 3.43 15 26 H 0.17 0.99 8.14 -2.38 -0.02 0.97 15 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 15 Total: -1.00 -67.89 284.39 4.43 -63.45 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.50 Total: 17.86 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 3.29 Total: 17.36 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -1.34 Total: -77.68 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: 0.11 Total: -61.42 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.15 Total: -3.15 kcal Total: -67.89 4.43 -63.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237800.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.754 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds