Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99719 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 9 7 13 13 O 1.45194 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.34233 * 116.99794 * 180.02562 * 13 12 10 15 15 O 1.20819 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99823 * 179.97438 * 14 13 12 17 17 H 1.09004 * 115.54981 * 34.41893 * 16 14 13 18 18 C 1.53001 * 117.50243 * 248.74814 * 16 14 13 19 19 C 1.52994 * 117.49917 * 180.08457 * 16 14 13 20 20 Cl 1.80298 * 117.50145 * 214.97934 * 19 16 14 21 21 Cl 1.80300 * 117.49868 * 359.97438 * 19 16 14 22 22 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99562 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.46883 * 300.00357 * 12 10 9 25 25 H 1.08998 * 109.46869 * 60.00030 * 12 10 9 26 26 H 1.08999 * 117.49630 * 0.02562 * 18 16 14 27 27 H 1.08992 * 117.49840 * 145.02247 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 8 6.0448 -3.7394 -0.0006 14 6 7.3756 -3.9152 -0.0002 15 8 8.1115 -2.9571 0.0012 16 6 7.9516 -5.3078 -0.0002 17 1 7.3818 -6.0522 -0.5564 18 6 8.6757 -5.7729 1.2648 19 6 9.4756 -5.4419 0.0024 20 17 10.1917 -6.8195 -0.9142 21 17 10.4451 -3.9217 0.0044 22 1 -0.4850 0.8401 -0.0004 23 1 3.8649 -0.3632 0.0004 24 1 5.9241 -1.8566 -0.8900 25 1 5.9241 -1.8567 0.8900 26 1 8.7351 -5.0717 2.0973 27 1 8.5827 -6.8232 1.5406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237801.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -87.273601 kcal Electronic energy + Delta-G solvation = -16984.169553 eV Core-core repulsion = 13603.087724 eV Total energy + Delta-G solvation = -3381.081829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73470 -38.62723 -37.81242 -36.45629 -36.17790 -35.45716 -34.09631 -31.83200 -28.95528 -25.60999 -24.11354 -22.78273 -20.59602 -19.68269 -18.62941 -18.42964 -16.75223 -16.57942 -16.15384 -15.55033 -15.07395 -14.48525 -14.24426 -13.57532 -13.45301 -13.07234 -12.89802 -12.64161 -12.30566 -12.26949 -12.18532 -11.48064 -11.32009 -11.29084 -11.02429 -10.67524 -10.61055 -10.50745 -10.08665 -9.98790 -9.70567 -8.70892 -8.32244 -6.41776 -3.94874 0.74082 1.67192 1.82234 2.42271 2.88159 2.96776 3.01397 3.10389 3.51616 3.57924 3.82972 4.01385 4.25793 4.72761 4.79894 4.99241 5.08148 5.20498 5.31464 5.49381 5.63206 6.36283 7.41149 7.64680 7.97786 8.44633 8.80878 9.26923 9.62006 10.70359 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.041065 B = 0.003408 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.682394 B = 8213.314532 C = 8706.945662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.317 6.317 14 C 0.483 3.517 15 O -0.486 6.486 16 C -0.132 4.132 17 H 0.161 0.839 18 C -0.111 4.111 19 C 0.018 3.982 20 Cl -0.083 7.083 21 Cl -0.053 7.053 22 H 0.276 0.724 23 H 0.373 0.627 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.130 0.870 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.663 -8.594 1.365 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.018 4.018 13 O -0.231 6.231 14 C 0.324 3.676 15 O -0.373 6.373 16 C -0.152 4.152 17 H 0.178 0.822 18 C -0.149 4.149 19 C -0.034 4.034 20 Cl -0.055 7.055 21 Cl -0.026 7.026 22 H 0.086 0.914 23 H 0.206 0.794 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.148 0.852 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.361 -8.851 1.287 22.239 hybrid contribution 0.699 1.554 -0.226 1.719 sum 21.060 -7.297 1.061 22.313 Atomic orbital electron populations 1.69616 1.05653 1.27794 1.48221 1.25044 0.95530 0.98085 0.97230 0.86679 0.79866 0.83852 0.79102 1.19394 1.19352 1.19911 1.19423 0.78633 0.96888 1.48750 0.85983 1.42033 1.07658 1.05695 1.66458 1.19160 0.86864 0.85167 0.85650 1.90610 1.69005 1.30692 1.53577 1.22801 0.95223 0.80012 1.03784 1.86524 1.22264 1.31575 1.82725 1.22114 0.81623 0.90134 0.73735 1.90788 1.60178 1.41981 1.44359 1.22508 0.91713 0.96263 1.04741 0.82173 1.24007 0.94304 1.05667 0.90885 1.26478 0.89192 0.85508 1.02185 1.98765 1.85404 1.44667 1.76709 1.98798 1.73204 1.32182 1.98403 0.91357 0.79370 0.89211 0.89222 0.85226 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.07 15 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 15 3 Si 0.88 18.81 27.74 -169.99 -4.71 14.09 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 5 H -0.27 -5.23 6.52 56.52 0.37 -4.86 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 15 8 H 0.12 3.84 7.39 -52.49 -0.39 3.46 15 9 N -0.58 -13.47 5.09 -10.96 -0.06 -13.52 15 10 C 0.45 10.07 7.86 -10.99 -0.09 9.99 15 11 O -0.56 -14.98 16.08 -14.11 -0.23 -15.21 15 12 C 0.06 1.01 5.94 36.01 0.21 1.23 15 13 O -0.32 -5.30 9.75 -45.91 -0.45 -5.75 15 14 C 0.48 6.66 7.74 36.01 0.28 6.94 15 15 O -0.49 -7.34 13.45 -18.74 -0.25 -7.59 15 16 C -0.13 -1.32 6.14 -91.77 -0.56 -1.88 15 17 H 0.16 1.34 8.14 -51.93 -0.42 0.92 15 18 C -0.11 -0.81 9.92 -26.69 -0.26 -1.07 15 19 C 0.02 0.17 3.62 -26.69 -0.10 0.08 15 20 Cl -0.08 -0.73 29.29 -51.86 -1.52 -2.24 15 21 Cl -0.05 -0.61 26.14 -51.86 -1.36 -1.97 15 22 H 0.28 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.37 7.54 5.76 -40.82 -0.24 7.30 15 24 H 0.09 1.36 8.13 -51.93 -0.42 0.94 15 25 H 0.09 1.33 8.13 -51.93 -0.42 0.91 15 26 H 0.13 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.14 0.64 8.14 -51.93 -0.42 0.21 15 LS Contribution 281.26 15.07 4.24 4.24 Total: -1.00 -32.55 281.26 -6.23 -38.78 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.90 Total: 5.53 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.77 Total: 7.72 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.72 Total: -37.60 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.93 Total: -28.55 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.09 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -2.87 Total: -4.21 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.55 -6.23 -38.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237801.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.495 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds