Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99719 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00123 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 9 7 13 13 O 1.45194 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.34233 * 116.99794 * 180.02562 * 13 12 10 15 15 O 1.20819 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99823 * 179.97438 * 14 13 12 17 17 H 1.09004 * 115.54981 * 34.41893 * 16 14 13 18 18 C 1.53001 * 117.50243 * 248.74814 * 16 14 13 19 19 C 1.52994 * 117.49917 * 180.08457 * 16 14 13 20 20 Cl 1.80298 * 117.50145 * 214.97934 * 19 16 14 21 21 Cl 1.80300 * 117.49868 * 359.97438 * 19 16 14 22 22 H 0.97006 * 119.99833 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99562 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.46883 * 300.00357 * 12 10 9 25 25 H 1.08998 * 109.46869 * 60.00030 * 12 10 9 26 26 H 1.08999 * 117.49630 * 0.02562 * 18 16 14 27 27 H 1.08992 * 117.49840 * 145.02247 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4474 -3.4209 -0.0009 12 6 5.5608 -2.3705 0.0000 13 8 6.0448 -3.7394 -0.0006 14 6 7.3756 -3.9152 -0.0002 15 8 8.1115 -2.9571 0.0012 16 6 7.9516 -5.3078 -0.0002 17 1 7.3818 -6.0522 -0.5564 18 6 8.6757 -5.7729 1.2648 19 6 9.4756 -5.4419 0.0024 20 17 10.1917 -6.8195 -0.9142 21 17 10.4451 -3.9217 0.0044 22 1 -0.4850 0.8401 -0.0004 23 1 3.8649 -0.3632 0.0004 24 1 5.9241 -1.8566 -0.8900 25 1 5.9241 -1.8567 0.8900 26 1 8.7351 -5.0717 2.0973 27 1 8.5827 -6.8232 1.5406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237801.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -108.979529 kcal Electronic energy + Delta-G solvation = -16985.110793 eV Core-core repulsion = 13603.087724 eV Total energy + Delta-G solvation = -3382.023069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.85343 -40.28785 -38.81291 -37.46502 -37.05158 -36.25063 -36.08556 -33.86889 -30.44602 -27.02175 -25.59052 -23.45465 -21.61425 -21.53968 -20.52508 -19.40399 -17.97838 -17.81417 -17.57121 -16.87436 -16.58771 -15.79597 -15.72559 -15.07464 -14.62121 -14.26819 -14.18140 -14.08109 -13.71696 -13.45359 -13.09880 -13.00005 -12.46359 -12.23342 -12.12388 -12.00684 -11.87233 -11.78662 -11.59003 -11.35283 -10.88140 -10.59910 -10.34469 -8.46276 -6.09436 0.01189 0.83191 0.87521 1.29871 1.33359 1.39590 1.45869 1.75540 2.10658 2.19931 2.73783 2.86332 3.08085 3.15771 3.58661 3.90461 4.09156 4.10902 4.14941 4.50924 4.62756 5.21137 5.47230 5.85166 6.44242 6.57262 6.77177 7.25406 7.77201 8.70196 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.041065 B = 0.003408 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.682394 B = 8213.314532 C = 8706.945662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.232 1.232 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.070 3.930 13 O -0.339 6.339 14 C 0.484 3.516 15 O -0.499 6.499 16 C -0.145 4.145 17 H 0.175 0.825 18 C -0.086 4.086 19 C 0.014 3.986 20 Cl -0.076 7.076 21 Cl -0.076 7.076 22 H 0.282 0.718 23 H 0.393 0.607 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.338 -7.713 1.743 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.155 1.155 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.007 4.007 13 O -0.254 6.254 14 C 0.326 3.674 15 O -0.387 6.387 16 C -0.164 4.164 17 H 0.193 0.807 18 C -0.123 4.123 19 C -0.038 4.038 20 Cl -0.049 7.049 21 Cl -0.049 7.049 22 H 0.092 0.908 23 H 0.229 0.771 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.154 0.846 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 23.073 -7.978 1.663 24.470 hybrid contribution -0.160 1.118 -0.353 1.184 sum 22.913 -6.859 1.310 23.954 Atomic orbital electron populations 1.69783 1.08067 1.29547 1.49041 1.26092 0.96468 1.02649 0.95607 0.85424 0.79560 0.76792 0.80182 1.17875 1.15507 1.19736 1.18999 0.80747 0.95319 1.51114 0.92075 1.41819 1.06119 1.07051 1.66820 1.20195 0.89390 0.83996 0.82910 1.90585 1.70978 1.32588 1.55152 1.22612 0.90490 0.81183 1.06431 1.86524 1.24281 1.31196 1.83407 1.22710 0.80304 0.91547 0.72808 1.90784 1.59988 1.42855 1.45027 1.22637 0.91958 0.94432 1.07412 0.80732 1.24286 0.90703 1.07610 0.89707 1.26598 0.88365 0.84994 1.03860 1.98770 1.85303 1.43994 1.76835 1.98795 1.73753 1.33816 1.98490 0.90830 0.77091 0.86641 0.86208 0.84584 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 13.96 21.66 0.30 -53.89 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 15 3 Si 0.96 37.46 27.74 68.60 1.90 39.36 15 4 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 5 H -0.23 -7.62 6.52 99.48 0.65 -6.97 15 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 7 C -0.33 -19.02 10.16 84.04 0.85 -18.17 15 8 H 0.06 4.15 7.39 -2.91 -0.02 4.13 15 9 N -0.58 -26.56 5.09 -306.98 -1.56 -28.12 15 10 C 0.45 20.13 7.86 87.66 0.69 20.82 15 11 O -0.61 -33.78 16.08 15.73 0.25 -33.53 15 12 C 0.07 2.23 5.94 71.24 0.42 2.65 15 13 O -0.34 -10.82 9.75 -45.09 -0.44 -11.26 15 14 C 0.48 12.35 7.74 71.24 0.55 12.90 15 15 O -0.50 -13.93 13.45 21.98 0.30 -13.63 15 16 C -0.14 -2.54 6.14 -11.54 -0.07 -2.61 15 17 H 0.18 2.52 8.14 -2.39 -0.02 2.50 15 18 C -0.09 -0.98 9.92 30.62 0.30 -0.68 15 19 C 0.01 0.23 3.62 30.62 0.11 0.34 15 20 Cl -0.08 -1.18 29.29 -2.72 -0.08 -1.26 15 21 Cl -0.08 -1.62 26.14 -2.72 -0.07 -1.69 15 22 H 0.28 15.05 8.31 -92.70 -0.77 14.28 15 23 H 0.39 14.81 5.76 -92.71 -0.53 14.28 15 24 H 0.12 3.13 8.13 -2.39 -0.02 3.11 15 25 H 0.12 3.14 8.13 -2.39 -0.02 3.12 15 26 H 0.14 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.17 0.86 8.14 -2.39 -0.02 0.84 15 Total: -1.00 -75.10 281.26 4.57 -70.53 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.64 Total: 18.21 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 3.33 Total: 15.29 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.26 Total: -82.02 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: 0.11 Total: -58.42 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.36 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.15 Total: -2.95 kcal Total: -75.10 4.57 -70.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237801.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.451 kcal (2) G-P(sol) polarization free energy of solvation -75.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds