Wall clock time and date at job start Wed Apr 15 2020 11:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47112 * 240.00153 * 3 2 1 5 5 H 1.48502 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47311 * 120.00489 * 3 2 1 7 7 C 1.38945 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00329 * 201.64360 * 7 2 1 9 9 N 1.37103 * 119.99829 * 21.64420 * 7 2 1 10 10 C 1.46494 * 119.99774 * 16.50382 * 9 7 2 11 11 C 1.50697 * 109.47187 * 264.07421 * 10 9 7 12 12 O 1.20826 * 119.99972 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00176 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00133 * 196.50031 * 9 7 2 15 15 O 1.21291 * 119.99944 * 0.02562 * 14 9 7 16 16 C 1.50699 * 120.00282 * 180.02562 * 14 9 7 17 17 H 1.09010 * 115.55795 * 325.68933 * 16 14 9 18 18 C 1.52993 * 117.50051 * 111.37919 * 16 14 9 19 19 C 1.52999 * 117.50196 * 180.02562 * 16 14 9 20 20 Cl 1.80297 * 117.50132 * 145.02120 * 19 16 14 21 21 Cl 1.80298 * 117.49847 * 359.97438 * 19 16 14 22 22 H 0.97004 * 120.00219 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47441 * 24.07249 * 10 9 7 24 24 H 1.09004 * 109.47437 * 144.07611 * 10 9 7 25 25 H 0.96702 * 117.00127 * 180.02562 * 13 11 10 26 26 H 1.09004 * 117.50042 * 359.97438 * 18 16 14 27 27 H 1.09010 * 117.51768 * 214.97509 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0317 -1.2361 0.3455 9 7 1.3958 -2.3490 -0.4369 10 6 0.1672 -2.2651 -1.2302 11 6 -1.0271 -2.4244 -0.3250 12 8 -0.8682 -2.5912 0.8611 13 8 -2.2674 -2.3818 -0.8365 14 6 1.9237 -3.5522 -0.1371 15 8 2.9407 -3.6216 0.5200 16 6 1.2502 -4.8116 -0.6184 17 1 0.1616 -4.7755 -0.6622 18 6 1.9732 -5.6357 -1.6855 19 6 1.8981 -6.1463 -0.2447 20 17 0.8027 -7.5389 0.0889 21 17 3.4093 -6.0921 0.7372 22 1 -0.4851 0.8401 0.0004 23 1 0.1203 -1.2957 -1.7263 24 1 0.1634 -3.0571 -1.9792 25 1 -3.0018 -2.4884 -0.2165 26 1 2.9358 -5.2669 -2.0398 27 1 1.3606 -6.1422 -2.4315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077214.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:58 Heat of formation + Delta-G solvation = -84.845574 kcal Electronic energy + Delta-G solvation = -18396.641883 eV Core-core repulsion = 15015.665341 eV Total energy + Delta-G solvation = -3380.976542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68066 -38.60509 -36.83662 -35.69310 -35.29812 -34.78071 -34.35146 -31.79500 -27.82020 -25.73159 -23.15037 -22.02242 -21.14121 -18.86521 -17.41467 -17.17720 -16.86794 -15.69083 -15.31929 -15.13512 -14.50490 -14.20561 -13.77492 -13.37154 -12.74616 -12.55962 -12.12487 -12.07487 -11.74614 -11.66955 -11.51282 -10.99341 -10.81218 -10.60622 -10.52760 -10.48289 -10.37948 -10.09793 -9.70357 -9.57355 -9.10789 -8.39408 -7.99601 -6.53352 -3.96839 1.43423 2.51971 2.96937 3.19854 3.20660 3.23634 3.40478 3.75222 3.93597 4.16084 4.32367 4.60596 4.80757 5.01302 5.31517 5.48368 5.62712 5.78680 5.90943 6.35362 6.49198 7.41995 7.47702 7.86390 8.27182 8.94580 8.99292 9.20364 9.73022 10.55441 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.006950 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.356275 B = 4027.873619 C = 4947.645311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.110 0.890 9 N -0.422 5.422 10 C 0.144 3.856 11 C 0.485 3.515 12 O -0.500 6.500 13 O -0.534 6.534 14 C 0.480 3.520 15 O -0.545 6.545 16 C -0.142 4.142 17 H 0.126 0.874 18 C -0.128 4.128 19 C 0.026 3.974 20 Cl -0.109 7.109 21 Cl -0.057 7.057 22 H 0.272 0.728 23 H 0.130 0.870 24 H 0.078 0.922 25 H 0.393 0.607 26 H 0.124 0.876 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 -8.124 -6.701 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.431 4.431 8 H 0.128 0.872 9 N -0.142 5.142 10 C 0.017 3.983 11 C 0.325 3.675 12 O -0.385 6.385 13 O -0.346 6.346 14 C 0.267 3.733 15 O -0.426 6.426 16 C -0.165 4.165 17 H 0.144 0.856 18 C -0.166 4.166 19 C -0.026 4.026 20 Cl -0.083 7.083 21 Cl -0.030 7.030 22 H 0.083 0.917 23 H 0.148 0.852 24 H 0.096 0.904 25 H 0.249 0.751 26 H 0.142 0.858 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.306 -8.093 -6.173 10.262 hybrid contribution -0.609 0.740 0.706 1.190 sum -1.915 -7.353 -5.467 9.361 Atomic orbital electron populations 1.69793 1.06098 1.28176 1.47826 1.25244 0.95308 1.00050 0.96642 0.85910 0.78982 0.80131 0.79224 1.19752 1.21002 1.19748 1.19688 0.97920 0.83064 1.42463 0.87238 1.43353 1.20085 1.05013 1.45725 1.20727 0.81435 1.04893 0.91215 1.23854 0.83384 0.71136 0.89108 1.90639 1.85800 1.44610 1.17440 1.84517 1.17338 1.86339 1.46373 1.18767 0.87471 0.82781 0.84249 1.90663 1.25511 1.85381 1.41078 1.23138 1.00814 0.91466 1.01090 0.85572 1.23906 1.04032 0.99146 0.89554 1.26313 0.88650 0.89688 0.97985 1.98719 1.65444 1.47790 1.96311 1.98766 1.33297 1.97818 1.73098 0.91708 0.85218 0.90401 0.75059 0.85789 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.34 9.28 55.50 0.52 -21.83 15 2 C 0.03 0.77 4.87 -17.47 -0.09 0.68 15 3 Si 0.93 19.89 29.60 -169.99 -5.03 14.86 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.30 -8.02 9.34 -14.93 -0.14 -8.16 15 8 H 0.11 3.02 7.37 -52.49 -0.39 2.64 15 9 N -0.42 -10.12 2.18 -116.10 -0.25 -10.37 15 10 C 0.14 2.95 4.85 -5.20 -0.03 2.93 15 11 C 0.49 10.33 5.72 36.00 0.21 10.54 15 12 O -0.50 -12.72 16.79 -18.75 -0.31 -13.04 15 13 O -0.53 -9.17 13.42 -39.25 -0.53 -9.69 15 14 C 0.48 11.06 7.20 -10.99 -0.08 10.99 15 15 O -0.55 -14.07 13.34 5.55 0.07 -13.99 15 16 C -0.14 -2.55 4.65 -91.78 -0.43 -2.97 15 17 H 0.13 2.15 6.73 -51.92 -0.35 1.80 15 18 C -0.13 -1.75 9.92 -26.71 -0.26 -2.02 15 19 C 0.03 0.43 3.62 -26.71 -0.10 0.33 15 20 Cl -0.11 -1.61 29.29 -51.86 -1.52 -3.13 15 21 Cl -0.06 -1.06 26.13 -51.86 -1.35 -2.42 15 22 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 23 H 0.13 2.77 6.37 -51.93 -0.33 2.44 15 24 H 0.08 1.26 6.98 -51.93 -0.36 0.90 15 25 H 0.39 5.18 9.10 45.56 0.41 5.59 15 26 H 0.12 1.68 8.14 -51.93 -0.42 1.25 15 27 H 0.12 1.24 8.14 -51.92 -0.42 0.82 15 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -31.64 272.67 -6.21 -37.85 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -0.99 Total: 5.34 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.91 Total: 12.31 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.26 Total: -32.20 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.77 Total: -36.72 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -2.87 Total: -5.55 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.64 -6.21 -37.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077214.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.999 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds