Wall clock time and date at job start Wed Apr 15 2020 11:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47112 * 240.00153 * 3 2 1 5 5 H 1.48502 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47311 * 120.00489 * 3 2 1 7 7 C 1.38945 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00329 * 201.64360 * 7 2 1 9 9 N 1.37103 * 119.99829 * 21.64420 * 7 2 1 10 10 C 1.46494 * 119.99774 * 16.50382 * 9 7 2 11 11 C 1.50697 * 109.47187 * 264.07421 * 10 9 7 12 12 O 1.20826 * 119.99972 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00176 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00133 * 196.50031 * 9 7 2 15 15 O 1.21291 * 119.99944 * 0.02562 * 14 9 7 16 16 C 1.50699 * 120.00282 * 180.02562 * 14 9 7 17 17 H 1.09010 * 115.55795 * 325.68933 * 16 14 9 18 18 C 1.52993 * 117.50051 * 111.37919 * 16 14 9 19 19 C 1.52999 * 117.50196 * 180.02562 * 16 14 9 20 20 Cl 1.80297 * 117.50132 * 145.02120 * 19 16 14 21 21 Cl 1.80298 * 117.49847 * 359.97438 * 19 16 14 22 22 H 0.97004 * 120.00219 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47441 * 24.07249 * 10 9 7 24 24 H 1.09004 * 109.47437 * 144.07611 * 10 9 7 25 25 H 0.96702 * 117.00127 * 180.02562 * 13 11 10 26 26 H 1.09004 * 117.50042 * 359.97438 * 18 16 14 27 27 H 1.09010 * 117.51768 * 214.97509 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0317 -1.2361 0.3455 9 7 1.3958 -2.3490 -0.4369 10 6 0.1672 -2.2651 -1.2302 11 6 -1.0271 -2.4244 -0.3250 12 8 -0.8682 -2.5912 0.8611 13 8 -2.2674 -2.3818 -0.8365 14 6 1.9237 -3.5522 -0.1371 15 8 2.9407 -3.6216 0.5200 16 6 1.2502 -4.8116 -0.6184 17 1 0.1616 -4.7755 -0.6622 18 6 1.9732 -5.6357 -1.6855 19 6 1.8981 -6.1463 -0.2447 20 17 0.8027 -7.5389 0.0889 21 17 3.4093 -6.0921 0.7372 22 1 -0.4851 0.8401 0.0004 23 1 0.1203 -1.2957 -1.7263 24 1 0.1634 -3.0571 -1.9792 25 1 -3.0018 -2.4884 -0.2165 26 1 2.9358 -5.2669 -2.0398 27 1 1.3606 -6.1422 -2.4315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077214.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:58 Heat of formation + Delta-G solvation = -105.878598 kcal Electronic energy + Delta-G solvation = -18397.553944 eV Core-core repulsion = 15015.665341 eV Total energy + Delta-G solvation = -3381.888602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33159 -40.20473 -38.24880 -37.05684 -36.83526 -36.36174 -35.90636 -33.67086 -29.52796 -27.47943 -24.72260 -23.25523 -22.74789 -20.47628 -19.08699 -18.77271 -18.55213 -17.36165 -16.94058 -16.53719 -16.18234 -15.91147 -15.37048 -15.06875 -14.17210 -13.98187 -13.67927 -13.49355 -13.36379 -13.30104 -12.89690 -12.64307 -12.40420 -12.19208 -12.12411 -12.06454 -11.84444 -11.55090 -11.40754 -10.94179 -10.88824 -10.12022 -9.83842 -8.42561 -5.92732 0.17307 1.21379 1.35714 1.45357 1.55177 1.61063 1.77669 2.24740 2.35014 2.56296 2.83888 3.06199 3.23148 3.46394 3.86930 4.17482 4.30930 4.55436 4.74386 4.77762 4.94447 5.48179 5.97012 6.00997 6.39781 7.12129 7.30781 7.46619 7.93724 8.64000 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.006950 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.356275 B = 4027.873619 C = 4947.645311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.437 5.437 10 C 0.142 3.858 11 C 0.493 3.507 12 O -0.549 6.549 13 O -0.518 6.518 14 C 0.472 3.528 15 O -0.585 6.585 16 C -0.161 4.161 17 H 0.137 0.863 18 C -0.086 4.086 19 C 0.014 3.986 20 Cl -0.090 7.090 21 Cl -0.085 7.085 22 H 0.274 0.726 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.413 0.587 26 H 0.128 0.872 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -8.725 -8.593 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.157 5.157 10 C 0.016 3.984 11 C 0.335 3.665 12 O -0.438 6.438 13 O -0.330 6.330 14 C 0.261 3.739 15 O -0.468 6.468 16 C -0.183 4.183 17 H 0.155 0.845 18 C -0.124 4.124 19 C -0.038 4.038 20 Cl -0.063 7.063 21 Cl -0.058 7.058 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.273 0.727 26 H 0.146 0.854 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.408 -8.703 -8.104 12.133 hybrid contribution -0.383 0.861 1.303 1.608 sum -2.791 -7.842 -6.802 10.749 Atomic orbital electron populations 1.69874 1.06786 1.28748 1.47731 1.25901 0.96061 1.02230 0.95849 0.85048 0.77883 0.76753 0.78928 1.18511 1.20070 1.21023 1.19581 0.97460 0.84992 1.44330 0.90015 1.43492 1.21178 1.04784 1.46213 1.20899 0.80018 1.06133 0.91355 1.23941 0.84511 0.69725 0.88313 1.90628 1.86670 1.47085 1.19445 1.84450 1.16744 1.85426 1.46419 1.19579 0.86906 0.84075 0.83320 1.90632 1.27260 1.86328 1.42622 1.22950 1.01113 0.89538 1.04684 0.84514 1.24169 1.04042 0.95635 0.88567 1.26484 0.87906 0.89644 0.99727 1.98722 1.64680 1.46539 1.96400 1.98763 1.34969 1.97926 1.74110 0.91592 0.86146 0.85748 0.72749 0.85408 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.12 9.28 21.66 0.20 -44.92 15 2 C 0.00 0.06 4.87 84.93 0.41 0.48 15 3 Si 0.99 40.96 29.60 68.60 2.03 42.99 15 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 5 H -0.28 -10.92 7.11 99.48 0.71 -10.22 15 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 7 C -0.34 -18.14 9.34 84.04 0.79 -17.36 15 8 H 0.08 4.74 7.37 -2.91 -0.02 4.72 15 9 N -0.44 -21.03 2.18 -639.61 -1.39 -22.43 15 10 C 0.14 5.62 4.85 85.63 0.42 6.03 15 11 C 0.49 20.34 5.72 71.24 0.41 20.75 15 12 O -0.55 -27.90 16.79 21.96 0.37 -27.54 15 13 O -0.52 -16.48 13.42 -51.38 -0.69 -17.17 15 14 C 0.47 21.80 7.20 87.66 0.63 22.43 15 15 O -0.58 -30.95 13.34 -3.06 -0.04 -30.99 15 16 C -0.16 -5.42 4.65 -11.54 -0.05 -5.48 15 17 H 0.14 4.31 6.73 -2.38 -0.02 4.29 15 18 C -0.09 -2.06 9.92 30.61 0.30 -1.76 15 19 C 0.01 0.45 3.62 30.61 0.11 0.56 15 20 Cl -0.09 -2.44 29.29 -2.72 -0.08 -2.52 15 21 Cl -0.08 -3.14 26.13 -2.72 -0.07 -3.21 15 22 H 0.27 13.22 8.31 -92.70 -0.77 12.45 15 23 H 0.12 5.01 6.37 -2.39 -0.02 5.00 15 24 H 0.12 3.66 6.98 -2.39 -0.02 3.64 15 25 H 0.41 9.84 9.10 -74.06 -0.67 9.16 15 26 H 0.13 3.05 8.14 -2.39 -0.02 3.03 15 27 H 0.17 2.46 8.14 -2.38 -0.02 2.44 15 Total: -1.00 -70.56 272.67 3.91 -66.65 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.57 Total: 13.48 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 3.01 Total: 25.65 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: -1.19 Total: -67.34 kcal Atomic # 8 Polarization: -75.34 SS G_CDS: -0.36 Total: -75.70 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 17 Polarization: -5.58 SS G_CDS: -0.15 Total: -5.73 kcal Total: -70.56 3.91 -66.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077214.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.225 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds