Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 120.00206 * 2 1 4 4 H 1.48495 * 109.47027 * 274.14466 * 3 2 1 5 5 H 1.48504 * 109.46703 * 34.14729 * 3 2 1 6 6 H 1.48499 * 109.46638 * 154.14410 * 3 2 1 7 7 C 1.38959 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99444 * 340.72635 * 7 2 1 9 9 N 1.37099 * 119.99887 * 160.73004 * 7 2 1 10 10 C 1.46494 * 119.99596 * 136.32747 * 9 7 2 11 11 C 1.50699 * 109.47207 * 93.30308 * 10 9 7 12 12 O 1.20822 * 120.00094 * 354.92258 * 11 10 9 13 13 O 1.34229 * 119.99934 * 174.92264 * 11 10 9 14 14 C 1.34775 * 119.99959 * 316.32426 * 9 7 2 15 15 O 1.21292 * 120.00003 * 0.02562 * 14 9 7 16 16 C 1.50692 * 120.00011 * 180.02562 * 14 9 7 17 17 H 1.08997 * 115.55245 * 34.41385 * 16 14 9 18 18 C 1.53006 * 117.50074 * 248.75101 * 16 14 9 19 19 C 1.52998 * 117.50077 * 180.09073 * 16 14 9 20 20 Cl 1.80303 * 117.49761 * 214.97863 * 19 16 14 21 21 Cl 1.80300 * 117.49931 * 359.97241 * 19 16 14 22 22 H 0.96998 * 119.99527 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47675 * 333.29990 * 10 9 7 24 24 H 1.09005 * 109.46685 * 213.30096 * 10 9 7 25 25 H 0.96702 * 116.99870 * 179.97438 * 13 11 10 26 26 H 1.09003 * 117.49791 * 359.97438 * 18 16 14 27 27 H 1.09000 * 117.50152 * 145.02144 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4081 2.0970 -1.3964 5 1 1.4922 2.6257 0.7859 6 1 3.5868 1.4163 0.6106 7 6 2.0089 -1.2034 -0.0005 8 1 1.5142 -2.1126 0.3078 9 7 3.3223 -1.2365 -0.3924 10 6 4.2965 -2.0149 0.3764 11 6 4.4203 -3.3937 -0.2192 12 8 3.6972 -3.7262 -1.1282 13 8 5.3338 -4.2523 0.2603 14 6 3.7170 -0.5530 -1.4849 15 8 2.9103 0.0917 -2.1211 16 6 5.1605 -0.5899 -1.9159 17 1 5.6793 -1.5324 -1.7414 18 6 5.9724 0.6996 -1.7772 19 6 5.5460 0.2084 -3.1629 20 17 6.8242 -0.4817 -4.2309 21 17 4.2383 1.1207 -4.0046 22 1 -0.4849 0.8401 0.0004 23 1 3.9629 -2.0946 1.4110 24 1 5.2657 -1.5170 0.3445 25 1 5.3755 -5.1253 -0.1536 26 1 5.4622 1.5746 -1.3745 27 1 7.0254 0.6052 -1.5119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -101.641933 kcal Electronic energy + Delta-G solvation = -18517.532098 eV Core-core repulsion = 15135.827211 eV Total energy + Delta-G solvation = -3381.704887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.005 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62590 -40.57971 -38.35509 -37.12053 -36.96350 -36.36767 -36.02213 -34.17543 -29.66069 -27.59764 -24.56199 -23.38194 -22.79869 -20.93672 -19.45319 -19.03415 -18.31997 -17.47949 -17.24462 -16.74433 -16.38282 -16.10706 -15.44768 -15.03585 -14.51650 -14.15744 -14.04642 -13.79535 -13.44045 -13.22308 -13.07687 -12.99348 -12.45024 -12.40822 -12.14077 -11.94682 -11.89057 -11.68163 -11.50450 -10.94932 -10.73349 -10.21817 -9.73144 -8.40041 -6.20371 0.11904 1.13388 1.20123 1.29425 1.35928 1.56198 1.60855 2.11096 2.29823 2.46386 2.66278 3.03109 3.06996 3.32792 3.75411 4.06996 4.19123 4.48784 4.53462 4.55632 4.66891 5.67386 5.69752 5.82448 6.66046 6.83013 7.09232 7.27258 7.75807 8.69412 Molecular weight = 281.01amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.010550 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.096201 B = 2653.277480 C = 4039.175691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.045 3.955 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.308 1.308 6 H -0.235 1.235 7 C -0.343 4.343 8 H 0.055 0.945 9 N -0.458 5.458 10 C 0.105 3.895 11 C 0.461 3.539 12 O -0.548 6.548 13 O -0.503 6.503 14 C 0.474 3.526 15 O -0.543 6.543 16 C -0.163 4.163 17 H 0.158 0.842 18 C -0.093 4.093 19 C 0.012 3.988 20 Cl -0.082 7.082 21 Cl -0.089 7.089 22 H 0.272 0.728 23 H 0.141 0.859 24 H 0.152 0.848 25 H 0.424 0.576 26 H 0.117 0.883 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.650 -1.076 0.517 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.159 4.159 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.238 1.238 6 H -0.158 1.158 7 C -0.470 4.470 8 H 0.072 0.928 9 N -0.181 5.181 10 C -0.019 4.019 11 C 0.302 3.698 12 O -0.437 6.437 13 O -0.316 6.316 14 C 0.264 3.736 15 O -0.424 6.424 16 C -0.185 4.185 17 H 0.175 0.825 18 C -0.131 4.131 19 C -0.041 4.041 20 Cl -0.055 7.055 21 Cl -0.062 7.062 22 H 0.082 0.918 23 H 0.159 0.841 24 H 0.169 0.831 25 H 0.285 0.715 26 H 0.135 0.865 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 18.847 -0.389 -0.017 18.851 hybrid contribution -0.746 -0.336 -0.718 1.089 sum 18.101 -0.725 -0.735 18.130 Atomic orbital electron populations 1.69869 1.08600 1.28852 1.47660 1.26025 0.95361 1.02543 0.92020 0.85698 0.80025 0.78503 0.77902 1.19261 1.23771 1.15806 1.18527 0.85922 0.94373 1.48147 0.92750 1.43289 1.07677 1.44116 1.23057 1.21474 0.96838 0.85619 0.98017 1.24616 0.76168 0.88919 0.80060 1.90779 1.43850 1.78292 1.30804 1.84483 1.54974 1.29456 1.62702 1.20068 0.89341 0.83537 0.80699 1.90682 1.54882 1.43532 1.53307 1.23112 0.95382 1.00994 0.99016 0.82471 1.24223 1.03928 0.95589 0.89373 1.26477 0.89548 1.02295 0.85741 1.98728 1.51657 1.85427 1.69668 1.98787 1.51654 1.75056 1.80683 0.91834 0.84143 0.83063 0.71477 0.86497 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.23 13.96 21.67 0.30 -56.92 15 2 C 0.04 2.60 4.85 84.93 0.41 3.02 15 3 Si 0.95 46.33 24.90 68.60 1.71 48.04 15 4 H -0.27 -13.80 6.33 99.48 0.63 -13.17 15 5 H -0.31 -14.99 7.11 99.48 0.71 -14.28 15 6 H -0.24 -9.61 7.11 99.48 0.71 -8.91 15 7 C -0.34 -19.10 9.66 84.04 0.81 -18.29 15 8 H 0.05 3.37 8.06 -2.91 -0.02 3.35 15 9 N -0.46 -20.18 1.64 -639.61 -1.05 -21.22 15 10 C 0.11 3.14 5.61 85.63 0.48 3.62 15 11 C 0.46 13.99 7.81 71.24 0.56 14.55 15 12 O -0.55 -22.90 17.19 21.98 0.38 -22.52 15 13 O -0.50 -9.97 13.42 -51.41 -0.69 -10.66 15 14 C 0.47 20.54 5.65 87.65 0.50 21.03 15 15 O -0.54 -28.36 9.37 -3.07 -0.03 -28.39 15 16 C -0.16 -4.89 4.65 -11.54 -0.05 -4.95 15 17 H 0.16 3.82 6.86 -2.39 -0.02 3.80 15 18 C -0.09 -2.08 9.92 30.62 0.30 -1.78 15 19 C 0.01 0.34 3.62 30.62 0.11 0.45 15 20 Cl -0.08 -1.99 29.29 -2.72 -0.08 -2.07 15 21 Cl -0.09 -3.35 26.13 -2.72 -0.07 -3.42 15 22 H 0.27 16.13 8.31 -92.71 -0.77 15.36 15 23 H 0.14 3.78 8.01 -2.39 -0.02 3.76 15 24 H 0.15 2.97 6.84 -2.38 -0.02 2.95 15 25 H 0.42 5.12 9.10 -74.06 -0.67 4.44 15 26 H 0.12 2.86 8.14 -2.39 -0.02 2.84 15 27 H 0.18 2.11 8.14 -2.39 -0.02 2.09 15 Total: -1.00 -81.34 271.67 4.07 -77.27 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 0.49 Total: 2.25 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 3.12 Total: 17.65 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.75 Total: -78.15 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.34 Total: -61.57 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.71 Total: 48.04 kcal Atomic # 17 Polarization: -5.34 SS G_CDS: -0.15 Total: -5.49 kcal Total: -81.34 4.07 -77.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.369 kcal (2) G-P(sol) polarization free energy of solvation -81.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds