Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48505 * 109.47074 * 240.00128 * 3 2 1 5 5 H 1.48508 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47339 * 120.00098 * 3 2 1 7 7 C 1.38808 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00402 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99887 * 359.97438 * 7 2 1 10 10 S 1.65603 * 119.99975 * 180.02562 * 9 7 2 11 11 O 1.42104 * 106.40135 * 311.46167 * 10 9 7 12 12 O 1.42095 * 106.40194 * 178.53939 * 10 9 7 13 13 C 1.76200 * 107.21666 * 65.00161 * 10 9 7 14 14 C 1.38412 * 119.92130 * 90.00226 * 13 10 9 15 15 C 1.38277 * 120.20332 * 180.02562 * 14 13 10 16 16 C 1.38218 * 120.32532 * 359.97063 * 15 14 13 17 17 C 1.39456 * 119.90993 * 0.02745 * 16 15 14 18 18 C 1.37694 * 119.91525 * 270.02084 * 13 10 9 19 19 C 1.47427 * 110.67656 * 180.02562 * 17 16 15 20 20 O 1.21257 * 126.05048 * 179.97438 * 19 17 16 21 21 C 1.50950 * 107.99847 * 359.92073 * 19 17 16 22 22 C 1.50983 * 130.49024 * 179.97438 * 16 15 14 23 23 H 0.97000 * 120.00065 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99473 * 0.02562 * 9 7 2 25 25 H 1.08008 * 119.90241 * 0.02562 * 14 13 10 26 26 H 1.07991 * 119.83902 * 180.02562 * 15 14 13 27 27 H 1.08001 * 119.97136 * 0.02562 * 18 13 10 28 28 H 1.09002 * 110.27317 * 241.06250 * 21 19 17 29 29 H 1.08997 * 110.27019 * 119.08473 * 21 19 17 30 30 H 1.09003 * 110.08578 * 60.81752 * 22 16 15 31 31 H 1.08998 * 110.09402 * 299.23887 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 16 2.1536 -3.8222 -0.0005 11 8 3.1359 -3.7184 -1.0221 12 8 1.1742 -4.8511 0.0342 13 6 3.0303 -3.9182 1.5248 14 6 2.4323 -4.4995 2.6295 15 6 3.1148 -4.5775 3.8296 16 6 4.3987 -4.0767 3.9361 17 6 5.0100 -3.4892 2.8289 18 6 4.3086 -3.4144 1.6151 19 6 6.3687 -3.0282 3.1680 20 8 7.1448 -2.4797 2.4150 21 6 6.6245 -3.3577 4.6187 22 6 5.3418 -4.0394 5.1145 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 1.4295 -4.8935 2.5539 26 1 2.6427 -5.0326 4.6876 27 1 4.7720 -2.9608 0.7514 28 1 6.8107 -2.4458 5.1860 29 1 7.4722 -4.0370 4.7079 30 1 5.5623 -5.0529 5.4498 31 1 4.9018 -3.4629 5.9282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000656184373.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -110.810667 kcal Electronic energy + Delta-G solvation = -19556.441173 eV Core-core repulsion = 16314.648350 eV Total energy + Delta-G solvation = -3241.792822 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.055 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57436 -39.26373 -38.13169 -36.78206 -36.51842 -36.06971 -32.87068 -32.26233 -30.43405 -27.13244 -26.46918 -24.25542 -22.67831 -21.34582 -20.20579 -19.92581 -18.66030 -18.13916 -17.37900 -16.91435 -16.78640 -16.47346 -16.17995 -15.74475 -15.45879 -15.13308 -14.72050 -14.55339 -13.97355 -13.80671 -13.25586 -13.17267 -13.12799 -13.06116 -12.99218 -12.91024 -12.67157 -12.41342 -12.23778 -12.10183 -11.89732 -11.61175 -10.80948 -10.26137 -10.16465 -10.09237 -8.35592 -5.93203 -0.57169 -0.34882 -0.08724 1.22302 1.42736 1.46100 1.52771 2.21918 2.41227 2.63578 2.86943 2.91230 3.16528 3.38085 3.58480 3.64323 3.84975 4.06653 4.17673 4.27196 4.37864 4.51428 4.74355 4.82007 4.93891 5.03244 5.05326 5.06022 5.09945 5.20314 5.59101 5.71169 6.38478 6.72732 6.89720 7.29172 8.82570 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.007137 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.144911 B = 3922.510070 C = 4871.589630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.316 4.316 8 H 0.097 0.903 9 N -0.973 5.973 10 S 2.675 3.325 11 O -1.001 7.001 12 O -1.002 7.002 13 C -0.692 4.692 14 C 0.000 4.000 15 C -0.134 4.134 16 C 0.006 3.994 17 C -0.249 4.249 18 C 0.025 3.975 19 C 0.398 3.602 20 O -0.492 6.492 21 C -0.158 4.158 22 C -0.078 4.078 23 H 0.274 0.726 24 H 0.409 0.591 25 H 0.156 0.844 26 H 0.183 0.817 27 H 0.117 0.883 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -7.671 15.931 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.213 4.213 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.450 4.450 8 H 0.115 0.885 9 N -0.726 5.726 10 S 2.767 3.233 11 O -0.991 6.991 12 O -0.992 6.992 13 C -0.779 4.779 14 C -0.019 4.019 15 C -0.152 4.152 16 C 0.006 3.994 17 C -0.251 4.251 18 C 0.006 3.994 19 C 0.279 3.721 20 O -0.370 6.370 21 C -0.195 4.195 22 C -0.114 4.114 23 H 0.083 0.917 24 H 0.244 0.756 25 H 0.174 0.826 26 H 0.200 0.800 27 H 0.135 0.865 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.589 -7.951 14.886 18.936 hybrid contribution -0.222 1.222 -0.259 1.269 sum 8.367 -6.729 14.627 18.145 Atomic orbital electron populations 1.69760 1.06863 1.28726 1.51257 1.25856 0.96385 1.01856 0.97162 0.85281 0.78023 0.77743 0.79200 1.19679 1.19904 1.19177 1.19281 0.91984 0.83854 1.49903 0.88507 1.51190 1.16672 1.18892 1.85891 1.02598 0.72657 0.72316 0.75754 1.93468 1.62312 1.87115 1.56233 1.93436 1.60314 1.57107 1.88319 1.31135 1.08009 1.14793 1.23926 1.21418 0.99710 0.89696 0.91058 1.21139 0.93649 1.01955 0.98476 1.21399 0.93850 0.88719 0.95453 1.21657 0.99444 1.08259 0.95721 1.20887 0.91600 0.89592 0.97365 1.23372 0.83979 0.72653 0.92083 1.90537 1.52399 1.35117 1.58913 1.22407 1.01187 1.05143 0.90762 1.21116 0.90788 1.05015 0.94460 0.91708 0.75602 0.82642 0.80017 0.86539 0.85000 0.84544 0.84965 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.00 13.06 21.65 0.28 -50.72 16 2 C -0.01 -0.56 5.50 84.86 0.47 -0.10 16 3 Si 0.97 42.49 29.55 68.60 2.03 44.52 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.32 -16.90 9.63 84.03 0.81 -16.09 16 8 H 0.10 5.07 7.82 -2.91 -0.02 5.05 16 9 N -0.97 -48.62 5.75 -54.27 -0.31 -48.93 16 10 S 2.67 120.45 5.70 -56.49 -0.32 120.13 16 11 O -1.00 -50.94 16.97 -128.00 -2.17 -53.12 16 12 O -1.00 -45.60 17.27 -128.00 -2.21 -47.81 16 13 C -0.69 -26.57 5.88 22.18 0.13 -26.44 16 14 C 0.00 0.01 9.52 22.32 0.21 0.22 16 15 C -0.13 -2.92 10.03 22.27 0.22 -2.70 16 16 C 0.01 0.14 6.21 -19.49 -0.12 0.02 16 17 C -0.25 -7.70 6.12 -20.04 -0.12 -7.82 16 18 C 0.03 0.98 9.58 22.66 0.22 1.20 16 19 C 0.40 11.10 7.78 28.19 0.22 11.32 16 20 O -0.49 -17.91 18.02 -2.96 -0.05 -17.97 16 21 C -0.16 -2.09 6.86 30.09 0.21 -1.89 16 22 C -0.08 -0.78 6.80 30.10 0.20 -0.58 16 23 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 24 H 0.41 20.68 8.02 -96.75 -0.78 19.90 16 25 H 0.16 4.24 7.61 -2.91 -0.02 4.22 16 26 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.12 4.96 7.60 -2.91 -0.02 4.94 16 28 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.91 291.54 0.09 -75.81 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.41 Total: 20.94 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 2.45 Total: -42.86 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -0.03 Total: -99.65 kcal Atomic # 8 Polarization: -114.46 SS G_CDS: -4.44 Total: -118.89 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 120.45 SS G_CDS: -0.32 Total: 120.13 kcal Total: -75.91 0.09 -75.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656184373.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.996 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds