Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48500 * 109.46983 * 239.99609 * 3 2 1 5 5 H 1.48498 * 109.46766 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46907 * 119.99468 * 3 2 1 7 7 C 1.37877 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99810 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47013 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46835 * 179.97438 * 10 9 7 12 12 C 1.34820 * 120.38098 * 270.79963 * 11 10 9 13 13 O 1.21297 * 120.20838 * 1.12288 * 12 11 10 14 14 C 1.50753 * 119.65602 * 181.68569 * 12 11 10 15 15 O 1.42993 * 109.63047 * 328.12679 * 14 12 11 16 16 C 1.36012 * 116.71508 * 46.39891 * 15 14 12 17 17 C 1.38378 * 120.64824 * 147.16838 * 16 15 14 18 18 C 1.38311 * 119.89045 * 179.81610 * 17 16 15 19 19 C 1.38389 * 120.24304 * 0.25585 * 18 17 16 20 20 Cl 1.73601 * 119.91409 * 179.97438 * 19 18 17 21 21 C 1.38384 * 120.17023 * 0.02562 * 19 18 17 22 22 C 1.38497 * 119.80570 * 359.97438 * 21 19 18 23 23 H 0.97000 * 120.00582 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46671 * 60.00149 * 9 7 2 25 25 H 1.08998 * 109.47190 * 299.99894 * 9 7 2 26 26 H 1.09000 * 109.47198 * 60.00003 * 10 9 7 27 27 H 1.08998 * 109.47000 * 299.99943 * 10 9 7 28 28 H 1.08997 * 109.44548 * 208.07368 * 14 12 11 29 29 H 1.09005 * 109.41237 * 88.15967 * 14 12 11 30 30 H 1.08002 * 120.05810 * 0.10283 * 17 16 15 31 31 H 1.08001 * 119.88024 * 180.27180 * 18 17 16 32 32 H 1.08006 * 120.09156 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 1.1572 -5.5123 1.1657 13 8 1.4240 -4.9782 2.2215 14 6 0.4373 -6.8367 1.1481 15 8 -0.3804 -6.9235 -0.0217 16 6 0.1944 -6.5559 -1.1983 17 6 -0.1630 -7.1766 -2.3823 18 6 0.4289 -6.7878 -3.5703 19 6 1.3812 -5.7837 -3.5788 20 17 2.1191 -5.3028 -5.0748 21 6 1.7476 -5.1627 -2.3976 22 6 1.1578 -5.5485 -1.2053 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8903 26 1 2.8712 -3.6040 0.8923 27 1 2.8726 -3.6047 -0.8877 28 1 -0.1892 -6.9210 2.0360 29 1 1.1676 -7.6460 1.1412 30 1 -0.9062 -7.9602 -2.3794 31 1 0.1466 -7.2693 -4.4949 32 1 2.4906 -4.3789 -2.4057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004511486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -69.012679 kcal Electronic energy + Delta-G solvation = -19531.946165 eV Core-core repulsion = 16289.922133 eV Total energy + Delta-G solvation = -3242.024032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.65047 -40.07246 -38.88950 -37.62366 -36.85385 -35.28122 -32.46914 -31.60507 -30.92204 -28.96329 -26.75354 -24.72487 -24.17931 -22.63388 -20.63242 -20.24354 -18.89268 -18.15417 -18.08833 -16.98126 -16.69976 -16.57464 -16.17149 -15.81197 -15.45861 -15.39032 -14.81402 -14.48182 -14.38665 -14.08473 -13.65441 -13.63561 -13.15018 -12.85705 -12.71025 -12.56362 -12.25023 -12.04964 -11.91453 -11.88353 -11.57711 -11.17240 -10.98004 -10.64851 -9.70617 -8.92026 -8.28040 -6.42329 -0.13578 0.05335 1.05788 1.19904 1.36423 1.41176 1.46671 1.50451 2.24021 2.36535 2.48726 2.89837 3.05538 3.51979 3.86712 3.97626 4.01565 4.03609 4.18964 4.36338 4.41835 4.58065 4.66957 4.68946 4.88140 5.11441 5.19341 5.31932 5.38864 5.41927 5.68859 5.80447 6.04996 6.22171 6.61345 6.73558 7.27982 8.84143 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.006157 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.350056 B = 4546.462588 C = 6050.927691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.123 3.877 11 N -0.552 5.552 12 C 0.469 3.531 13 O -0.550 6.550 14 C 0.062 3.938 15 O -0.304 6.304 16 C 0.067 3.933 17 C -0.084 4.084 18 C -0.093 4.093 19 C -0.032 4.032 20 Cl -0.059 7.059 21 C -0.128 4.128 22 C 0.094 3.906 23 H 0.266 0.734 24 H -0.006 1.006 25 H -0.023 1.023 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.134 0.866 30 H 0.183 0.817 31 H 0.178 0.822 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 -18.665 -8.111 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.008 4.008 10 C 0.003 3.997 11 N -0.276 5.276 12 C 0.259 3.741 13 O -0.427 6.427 14 C -0.015 4.015 15 O -0.218 6.218 16 C 0.021 3.979 17 C -0.103 4.103 18 C -0.112 4.112 19 C -0.060 4.060 20 Cl -0.030 7.030 21 C -0.149 4.149 22 C -0.001 4.001 23 H 0.074 0.926 24 H 0.012 0.988 25 H -0.005 1.005 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.184 0.816 29 H 0.152 0.848 30 H 0.200 0.800 31 H 0.195 0.805 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.375 -18.261 -7.555 19.810 hybrid contribution 0.536 1.653 0.301 1.764 sum 1.911 -16.608 -7.254 18.223 Atomic orbital electron populations 1.70113 1.08095 1.28145 1.50791 1.26040 0.95770 1.03694 0.94139 0.85397 0.78211 0.77401 0.79440 1.18434 1.20740 1.19208 1.21448 0.93784 0.91420 1.51866 0.91226 1.19113 0.94277 0.92968 0.94444 1.21763 0.94692 0.80394 1.02886 1.45994 1.53884 1.22838 1.04869 1.22417 0.79290 0.89449 0.82953 1.90754 1.55153 1.65860 1.30942 1.23430 0.96832 0.92088 0.89191 1.86198 1.38752 1.83570 1.13260 1.19007 0.95020 0.95549 0.88356 1.20806 1.01535 1.00162 0.87806 1.21235 0.94530 0.95639 0.99778 1.20702 0.99281 0.99318 0.86653 1.98374 1.81893 1.91377 1.31405 1.20615 1.02211 1.02189 0.89903 1.18233 0.99058 0.96217 0.86575 0.92576 0.98778 1.00480 0.90882 0.88685 0.81600 0.84806 0.79962 0.80489 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.03 1.67 5.30 29.85 0.16 1.83 16 10 C 0.12 5.44 5.12 86.38 0.44 5.88 16 11 N -0.55 -21.20 2.71 -630.69 -1.71 -22.90 16 12 C 0.47 17.18 7.66 87.67 0.67 17.85 16 13 O -0.55 -24.55 16.76 -3.08 -0.05 -24.60 16 14 C 0.06 1.46 7.17 71.25 0.51 1.97 16 15 O -0.30 -7.76 10.45 -93.68 -0.98 -8.74 16 16 C 0.07 1.78 6.45 22.58 0.15 1.93 16 17 C -0.08 -1.58 10.00 22.32 0.22 -1.36 16 18 C -0.09 -1.68 9.82 22.32 0.22 -1.47 16 19 C -0.03 -0.78 6.32 22.34 0.14 -0.64 16 20 Cl -0.06 -1.35 28.95 -2.72 -0.08 -1.43 16 21 C -0.13 -3.86 9.14 22.37 0.20 -3.66 16 22 C 0.09 3.04 6.39 38.14 0.24 3.28 16 23 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 26 H 0.07 3.34 7.50 -2.39 -0.02 3.32 16 27 H 0.10 3.75 5.96 -2.39 -0.01 3.73 16 28 H 0.17 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.14 4.32 6.12 -2.91 -0.02 4.30 16 Total: -1.00 -75.12 295.25 4.30 -70.81 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.15 Total: 3.51 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.65 Total: -5.37 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.42 Total: -81.06 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.03 Total: -33.34 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -75.12 4.30 -70.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004511486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.802 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds