Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47102 * 240.00296 * 3 2 1 5 5 H 1.48506 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46885 * 120.00033 * 3 2 1 7 7 C 1.37883 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99650 * 175.46906 * 7 2 1 9 9 C 1.50692 * 120.00072 * 355.73691 * 7 2 1 10 10 C 1.53003 * 115.55015 * 35.31923 * 9 7 2 11 11 O 1.45203 * 109.46827 * 54.24419 * 10 9 7 12 12 C 1.34672 * 116.99978 * 184.93793 * 11 10 9 13 13 O 1.21429 * 119.99444 * 5.03480 * 12 11 10 14 14 C 1.48044 * 120.00187 * 185.03269 * 12 11 10 15 15 C 1.39905 * 120.92126 * 185.03822 * 14 12 11 16 16 C 1.38088 * 119.02889 * 179.97438 * 15 14 12 17 17 N 1.31852 * 120.92551 * 359.97438 * 16 15 14 18 18 C 1.31886 * 122.03564 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.56294 * 179.97438 * 18 17 16 20 20 C 1.38350 * 120.86714 * 359.74031 * 18 17 16 21 21 C 1.53005 * 117.49970 * 249.65174 * 9 7 2 22 22 C 1.53003 * 117.49893 * 180.99391 * 9 7 2 23 23 H 0.96998 * 119.99919 * 4.99610 * 1 2 3 24 24 H 1.09003 * 109.46693 * 174.23965 * 10 9 7 25 25 H 1.08997 * 109.47103 * 294.24320 * 10 9 7 26 26 H 1.07994 * 120.48768 * 0.02562 * 15 14 12 27 27 H 1.08006 * 119.53756 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.50429 * 180.26734 * 20 18 17 29 29 H 1.08998 * 117.49783 * 359.97438 * 21 9 7 30 30 H 1.09003 * 117.49893 * 145.02133 * 21 9 7 31 31 H 1.09006 * 117.49578 * 214.98058 * 22 9 7 32 32 H 1.08995 * 117.49856 * 359.97368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1955 -0.0744 9 6 1.2542 -2.4974 0.0959 10 6 -0.0999 -2.5335 -0.6156 11 8 0.0720 -2.1419 -2.0033 12 6 -1.0439 -2.0223 -2.7475 13 8 -2.1351 -2.1491 -2.2301 14 6 -0.9404 -1.7360 -4.1963 15 6 -2.0848 -1.5044 -4.9670 16 6 -1.9428 -1.2406 -6.3150 17 7 -0.7504 -1.2048 -6.8765 18 6 0.3540 -1.4172 -6.1876 19 17 1.8909 -1.3554 -6.9925 20 6 0.3040 -1.6839 -4.8310 21 6 1.3925 -3.2980 1.3924 22 6 2.0775 -3.7869 0.1138 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5069 -3.5436 -0.5709 25 1 -0.7863 -1.8430 -0.1256 26 1 -3.0649 -1.5307 -4.5142 27 1 -2.8208 -1.0609 -6.9178 28 1 1.2123 -1.8527 -4.2717 29 1 2.0265 -2.8821 2.1755 30 1 0.5189 -3.8507 1.7383 31 1 1.6543 -4.6611 -0.3810 32 1 3.1618 -3.6926 0.0555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078949139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -25.114589 kcal Electronic energy + Delta-G solvation = -19379.739885 eV Core-core repulsion = 16139.619417 eV Total energy + Delta-G solvation = -3240.120468 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52907 -39.16660 -36.86870 -36.63683 -35.13234 -32.86683 -32.24153 -31.15309 -26.96135 -25.57595 -24.58684 -23.58793 -21.36136 -20.76592 -19.25089 -17.93861 -17.12446 -16.38087 -15.88376 -15.78676 -15.56312 -14.89463 -14.73542 -14.38165 -14.12854 -13.79140 -13.10692 -12.25926 -12.15183 -11.94179 -11.76752 -11.59915 -11.36677 -11.04603 -10.88123 -10.57613 -10.42038 -10.30025 -10.01747 -9.89302 -9.64764 -9.42455 -9.10993 -9.06292 -8.84576 -8.32119 -6.05560 -4.18956 0.55466 0.82004 1.71216 2.91286 3.20678 3.25561 3.30408 3.32347 3.71048 4.29698 4.30760 4.69254 4.81234 4.87221 5.04912 5.12179 5.42628 5.49743 5.67749 5.93998 6.02234 6.14137 6.27169 6.38970 6.53578 6.57246 6.71122 6.88184 7.17145 7.34618 7.43519 7.50221 7.84352 8.24390 8.44726 8.78720 9.43620 10.89270 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.005794 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.951018 B = 4831.574590 C = 5263.299800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.044 3.956 10 C 0.119 3.881 11 O -0.310 6.310 12 C 0.501 3.499 13 O -0.507 6.507 14 C -0.048 4.048 15 C -0.114 4.114 16 C 0.109 3.891 17 N -0.466 5.466 18 C 0.164 3.836 19 Cl -0.027 7.027 20 C -0.097 4.097 21 C -0.194 4.194 22 C -0.208 4.208 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -3.143 -10.338 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.043 3.957 10 C 0.046 3.954 11 O -0.224 6.224 12 C 0.344 3.656 13 O -0.398 6.398 14 C -0.058 4.058 15 C -0.134 4.134 16 C -0.048 4.048 17 N -0.178 5.178 18 C 0.000 4.000 19 Cl 0.002 6.998 20 C -0.118 4.118 21 C -0.232 4.232 22 C -0.246 4.246 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.140 0.860 26 H 0.174 0.826 27 H 0.190 0.810 28 H 0.183 0.817 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.296 -2.851 -11.003 11.596 hybrid contribution 0.459 0.666 0.902 1.212 sum -1.837 -2.186 -10.100 10.496 Atomic orbital electron populations 1.69730 1.05923 1.26942 1.49655 1.24961 0.94877 0.99250 0.93883 0.86563 0.79576 0.82570 0.78830 1.20017 1.21187 1.20068 1.20421 0.92788 0.88326 1.50251 0.91911 1.18931 0.92160 0.90721 0.93866 1.22976 0.99916 0.96525 0.75974 1.86481 1.32524 1.77266 1.26093 1.20653 0.83744 0.74627 0.86564 1.90766 1.28941 1.47010 1.73052 1.19772 0.93626 1.00054 0.92319 1.22428 0.99880 0.96493 0.94637 1.22630 0.93978 0.96067 0.92156 1.66851 0.98122 1.12222 1.40572 1.21543 0.88637 1.00466 0.89343 1.98411 1.24173 1.96510 1.80722 1.22334 0.99928 0.96472 0.93074 1.22997 1.01778 1.06024 0.92425 1.22965 0.98833 0.99830 1.02950 0.92610 0.95862 0.85989 0.82603 0.80978 0.81674 0.89723 0.91364 0.91226 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.80 10.16 55.43 0.56 -23.24 16 2 C 0.07 1.91 5.35 -17.82 -0.10 1.81 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.48 -12.55 8.79 -34.44 -0.30 -12.85 16 8 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 9 C 0.04 1.05 2.21 -155.66 -0.34 0.70 16 10 C 0.12 2.81 4.45 37.16 0.17 2.98 16 11 O -0.31 -7.06 9.09 -40.42 -0.37 -7.43 16 12 C 0.50 10.30 7.91 34.75 0.27 10.57 16 13 O -0.51 -11.25 16.15 -19.21 -0.31 -11.56 16 14 C -0.05 -0.80 5.91 -104.67 -0.62 -1.42 16 15 C -0.11 -1.53 9.68 -39.01 -0.38 -1.90 16 16 C 0.11 1.26 11.17 -17.60 -0.20 1.07 16 17 N -0.47 -6.46 10.31 -10.41 -0.11 -6.57 16 18 C 0.16 2.38 7.27 -17.49 -0.13 2.25 16 19 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 16 20 C -0.10 -1.52 9.47 -38.96 -0.37 -1.89 16 21 C -0.19 -4.14 9.96 -26.69 -0.27 -4.41 16 22 C -0.21 -4.32 9.92 -26.69 -0.26 -4.59 16 23 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 24 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.12 3.21 5.76 -51.93 -0.30 2.91 16 26 H 0.16 1.86 7.75 -52.49 -0.41 1.46 16 27 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 28 H 0.17 2.59 7.72 -52.49 -0.41 2.19 16 29 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -28.47 303.85 -7.89 -36.35 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.19 Total: 1.85 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.52 Total: -7.68 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.46 Total: -29.80 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.68 Total: -18.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.47 -7.89 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078949139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.239 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds