Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47102 * 240.00296 * 3 2 1 5 5 H 1.48506 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46885 * 120.00033 * 3 2 1 7 7 C 1.37883 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99650 * 175.46906 * 7 2 1 9 9 C 1.50692 * 120.00072 * 355.73691 * 7 2 1 10 10 C 1.53003 * 115.55015 * 35.31923 * 9 7 2 11 11 O 1.45203 * 109.46827 * 54.24419 * 10 9 7 12 12 C 1.34672 * 116.99978 * 184.93793 * 11 10 9 13 13 O 1.21429 * 119.99444 * 5.03480 * 12 11 10 14 14 C 1.48044 * 120.00187 * 185.03269 * 12 11 10 15 15 C 1.39905 * 120.92126 * 185.03822 * 14 12 11 16 16 C 1.38088 * 119.02889 * 179.97438 * 15 14 12 17 17 N 1.31852 * 120.92551 * 359.97438 * 16 15 14 18 18 C 1.31886 * 122.03564 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.56294 * 179.97438 * 18 17 16 20 20 C 1.38350 * 120.86714 * 359.74031 * 18 17 16 21 21 C 1.53005 * 117.49970 * 249.65174 * 9 7 2 22 22 C 1.53003 * 117.49893 * 180.99391 * 9 7 2 23 23 H 0.96998 * 119.99919 * 4.99610 * 1 2 3 24 24 H 1.09003 * 109.46693 * 174.23965 * 10 9 7 25 25 H 1.08997 * 109.47103 * 294.24320 * 10 9 7 26 26 H 1.07994 * 120.48768 * 0.02562 * 15 14 12 27 27 H 1.08006 * 119.53756 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.50429 * 180.26734 * 20 18 17 29 29 H 1.08998 * 117.49783 * 359.97438 * 21 9 7 30 30 H 1.09003 * 117.49893 * 145.02133 * 21 9 7 31 31 H 1.09006 * 117.49578 * 214.98058 * 22 9 7 32 32 H 1.08995 * 117.49856 * 359.97368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1955 -0.0744 9 6 1.2542 -2.4974 0.0959 10 6 -0.0999 -2.5335 -0.6156 11 8 0.0720 -2.1419 -2.0033 12 6 -1.0439 -2.0223 -2.7475 13 8 -2.1351 -2.1491 -2.2301 14 6 -0.9404 -1.7360 -4.1963 15 6 -2.0848 -1.5044 -4.9670 16 6 -1.9428 -1.2406 -6.3150 17 7 -0.7504 -1.2048 -6.8765 18 6 0.3540 -1.4172 -6.1876 19 17 1.8909 -1.3554 -6.9925 20 6 0.3040 -1.6839 -4.8310 21 6 1.3925 -3.2980 1.3924 22 6 2.0775 -3.7869 0.1138 23 1 -0.4850 0.8368 -0.0732 24 1 -0.5069 -3.5436 -0.5709 25 1 -0.7863 -1.8430 -0.1256 26 1 -3.0649 -1.5307 -4.5142 27 1 -2.8208 -1.0609 -6.9178 28 1 1.2123 -1.8527 -4.2717 29 1 2.0265 -2.8821 2.1755 30 1 0.5189 -3.8507 1.7383 31 1 1.6543 -4.6611 -0.3810 32 1 3.1618 -3.6926 0.0555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078949139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -39.698765 kcal Electronic energy + Delta-G solvation = -19380.372303 eV Core-core repulsion = 16139.619417 eV Total energy + Delta-G solvation = -3240.752885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81315 -40.65256 -38.57375 -37.75119 -36.84582 -34.21139 -34.06195 -32.24044 -28.66258 -27.50467 -25.98259 -24.69581 -23.02919 -22.20692 -21.10617 -19.35350 -18.71737 -17.94551 -17.31390 -17.19102 -16.93193 -16.54123 -16.36257 -15.62008 -15.49960 -15.12268 -14.82572 -13.93686 -13.80124 -13.49228 -13.11570 -12.90036 -12.85933 -12.74515 -12.43679 -12.36130 -12.13254 -11.93132 -11.55272 -11.29921 -11.20389 -10.94160 -10.89831 -10.68764 -10.18329 -10.17244 -8.01352 -6.20649 -0.67743 -0.26116 0.62675 1.41742 1.42837 1.47595 1.49793 1.72130 2.40457 2.50913 3.00312 3.26121 3.48147 3.59563 3.69750 3.80128 3.97305 4.22351 4.33912 4.41537 4.51001 4.60572 4.74340 4.88431 4.92379 4.99722 5.18644 5.23680 5.45055 5.52217 5.70439 5.84743 6.31681 6.44142 6.72110 6.85564 7.43217 8.90079 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.005794 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.951018 B = 4831.574590 C = 5263.299800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.031 3.969 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.495 4.495 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.127 3.873 11 O -0.324 6.324 12 C 0.498 3.502 13 O -0.531 6.531 14 C -0.070 4.070 15 C -0.105 4.105 16 C 0.128 3.872 17 N -0.471 5.471 18 C 0.160 3.840 19 Cl -0.017 7.017 20 C -0.105 4.105 21 C -0.186 4.186 22 C -0.187 4.187 23 H 0.258 0.742 24 H 0.034 0.966 25 H 0.092 0.908 26 H 0.171 0.829 27 H 0.222 0.778 28 H 0.155 0.845 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -3.242 -11.737 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.054 3.946 11 O -0.238 6.238 12 C 0.343 3.657 13 O -0.423 6.423 14 C -0.080 4.080 15 C -0.125 4.125 16 C -0.029 4.029 17 N -0.183 5.183 18 C -0.003 4.003 19 Cl 0.011 6.989 20 C -0.126 4.126 21 C -0.224 4.224 22 C -0.224 4.224 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.189 0.811 27 H 0.239 0.761 28 H 0.173 0.827 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.469 -2.962 -12.404 12.990 hybrid contribution 0.491 0.659 1.285 1.525 sum -1.978 -2.303 -11.120 11.527 Atomic orbital electron populations 1.69910 1.06833 1.26913 1.50645 1.25581 0.95535 1.01814 0.93949 0.85751 0.78492 0.79379 0.78919 1.19678 1.21329 1.19544 1.20661 0.92705 0.89712 1.50108 0.92495 1.19078 0.93011 0.91403 0.96241 1.22701 0.99296 0.96149 0.76486 1.86477 1.33825 1.77715 1.25782 1.21313 0.82884 0.73582 0.87947 1.90734 1.29419 1.48245 1.73936 1.19668 0.95393 1.02692 0.90205 1.22702 0.99394 0.95200 0.95180 1.23399 0.94617 0.93276 0.91606 1.67001 0.98554 1.12143 1.40580 1.21550 0.89400 1.00433 0.88947 1.98410 1.23699 1.96440 1.80340 1.22206 0.99307 0.97412 0.93692 1.23007 1.02329 1.05076 0.91962 1.22984 0.98875 0.98579 1.01938 0.93237 0.94795 0.89005 0.81140 0.76136 0.82678 0.89838 0.89806 0.89302 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.75 10.16 21.45 0.22 -49.53 16 2 C 0.03 1.64 5.35 84.66 0.45 2.09 16 3 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.49 -26.04 8.79 25.60 0.22 -25.81 16 8 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 9 C 0.00 0.15 2.21 -52.93 -0.12 0.03 16 10 C 0.13 6.11 4.45 71.98 0.32 6.43 16 11 O -0.32 -15.09 9.09 -55.81 -0.51 -15.60 16 12 C 0.50 20.80 7.91 70.42 0.56 21.35 16 13 O -0.53 -23.97 16.15 20.07 0.32 -23.65 16 14 C -0.07 -2.31 5.91 -19.90 -0.12 -2.42 16 15 C -0.10 -2.58 9.68 22.64 0.22 -2.36 16 16 C 0.13 2.53 11.17 84.65 0.95 3.48 16 17 N -0.47 -11.81 10.31 -186.84 -1.93 -13.74 16 18 C 0.16 4.43 7.27 84.71 0.62 5.04 16 19 Cl -0.02 -0.44 29.10 -2.72 -0.08 -0.52 16 20 C -0.11 -3.26 9.47 22.67 0.21 -3.04 16 21 C -0.19 -7.75 9.96 30.62 0.30 -7.44 16 22 C -0.19 -7.48 9.92 30.62 0.30 -7.17 16 23 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 24 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 25 H 0.09 5.00 5.76 -2.39 -0.01 4.98 16 26 H 0.17 3.69 7.75 -2.91 -0.02 3.66 16 27 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.16 5.01 7.72 -2.91 -0.02 4.99 16 29 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 30 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -61.48 303.85 5.13 -56.35 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.15 Total: 12.03 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 3.92 Total: -9.83 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.71 Total: -63.27 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.18 Total: -39.25 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -61.48 5.13 -56.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078949139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.653 kcal (2) G-P(sol) polarization free energy of solvation -61.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds