Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47097 * 269.99917 * 3 2 1 5 5 H 1.48507 * 109.47105 * 29.99629 * 3 2 1 6 6 H 1.48495 * 109.47383 * 149.99551 * 3 2 1 7 7 C 1.38811 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00029 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46968 * 35.00268 * 10 9 7 12 12 C 1.50698 * 109.46972 * 155.00376 * 10 9 7 13 13 C 1.38415 * 120.02708 * 224.99912 * 12 10 9 14 14 F 1.35099 * 120.00946 * 359.97438 * 13 12 10 15 15 C 1.38474 * 119.97981 * 179.97438 * 13 12 10 16 16 C 1.38210 * 120.02023 * 0.28104 * 15 13 12 17 17 C 1.38201 * 120.05118 * 359.44081 * 16 15 13 18 18 C 1.38420 * 120.02535 * 44.97419 * 12 10 9 19 19 F 1.35097 * 120.01373 * 0.02562 * 18 12 10 20 20 C 1.52999 * 109.47016 * 274.99876 * 10 9 7 21 21 F 1.39899 * 109.47411 * 300.00475 * 20 10 9 22 22 F 1.39904 * 109.47042 * 60.00494 * 20 10 9 23 23 F 1.39896 * 109.47239 * 179.97438 * 20 10 9 24 24 H 0.96999 * 120.00575 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99781 * 0.02562 * 9 7 2 26 26 H 1.08002 * 119.98641 * 179.97438 * 15 13 12 27 27 H 1.08000 * 119.96986 * 179.70463 * 16 15 13 28 28 H 1.08002 * 119.98829 * 180.25980 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1943 -4.7351 0.6041 13 6 1.7285 -5.6150 1.5295 14 9 3.0250 -5.5077 1.8937 15 6 0.9335 -6.6052 2.0818 16 6 -0.3913 -6.7188 1.7050 17 6 -0.9273 -5.8372 0.7854 18 6 -0.1343 -4.8462 0.2318 19 9 -0.6570 -3.9881 -0.6713 20 6 2.4221 -4.0368 -1.4339 21 9 1.2533 -4.1738 -2.1904 22 9 3.2243 -3.0357 -1.9922 23 9 3.1222 -5.2480 -1.4329 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0016 26 1 1.3504 -7.2921 2.8036 27 1 -1.0093 -7.4944 2.1327 28 1 -1.9639 -5.9243 0.4949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096500240.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -202.481180 kcal Electronic energy + Delta-G solvation = -23139.515907 eV Core-core repulsion = 18798.050826 eV Total energy + Delta-G solvation = -4341.465081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.053 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.21932 -48.84441 -48.60091 -46.71279 -46.58242 -38.78256 -35.49936 -32.49024 -30.21432 -30.06025 -27.23940 -24.09775 -23.19715 -22.62411 -20.95977 -18.25282 -17.85832 -17.59486 -17.30748 -17.11448 -16.46161 -15.76633 -15.55098 -15.36373 -14.99925 -14.57903 -14.22891 -13.86530 -13.64542 -13.42288 -13.19832 -13.10099 -12.81631 -12.80860 -12.62220 -12.54366 -12.06241 -11.80979 -11.54372 -11.21646 -10.93622 -10.89225 -10.21911 -9.99852 -9.26559 -8.80968 -8.61790 -7.41773 -6.02219 -3.35798 1.01064 1.09264 3.31467 3.38830 3.41378 3.41781 3.72104 4.03741 4.33107 4.45822 4.54294 4.67617 4.80676 4.85839 5.05444 5.17290 5.25594 5.49980 5.71088 5.80241 5.84782 6.01330 6.07216 6.18826 6.23651 6.85189 7.52132 8.09970 9.25265 9.63713 10.02588 11.17706 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.007499 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.395062 B = 3733.163699 C = 4036.458727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.005 3.995 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.082 0.918 9 N -0.685 5.685 10 C 0.183 3.817 11 H 0.106 0.894 12 C -0.166 4.166 13 C 0.148 3.852 14 F -0.127 7.127 15 C -0.171 4.171 16 C -0.063 4.063 17 C -0.170 4.170 18 C 0.156 3.844 19 F -0.107 7.107 20 C 0.407 3.593 21 F -0.187 7.187 22 F -0.179 7.179 23 F -0.206 7.206 24 H 0.262 0.738 25 H 0.399 0.601 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -13.653 3.203 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.194 4.194 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.065 3.935 11 H 0.124 0.876 12 C -0.169 4.169 13 C 0.128 3.872 14 F -0.105 7.105 15 C -0.190 4.190 16 C -0.082 4.082 17 C -0.189 4.189 18 C 0.136 3.864 19 F -0.085 7.085 20 C 0.347 3.653 21 F -0.169 7.169 22 F -0.160 7.160 23 F -0.188 7.188 24 H 0.072 0.928 25 H 0.238 0.762 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.063 -13.346 3.175 13.718 hybrid contribution 0.332 1.025 -0.520 1.196 sum 0.269 -12.321 2.654 12.607 Atomic orbital electron populations 1.69693 1.05391 1.26695 1.54229 1.24892 0.95595 0.98289 1.00587 0.86042 0.78782 0.82527 0.77926 1.21080 1.21391 1.20170 1.19345 0.91607 0.83051 1.45575 0.90011 1.42697 1.07007 0.98430 1.84156 1.20036 0.97288 0.86714 0.89427 0.87634 1.19938 0.95035 0.99705 1.02255 1.17093 0.79001 0.95700 0.95447 1.91517 1.33624 1.95353 1.90013 1.21090 0.94713 0.99749 1.03491 1.20787 0.94147 0.97824 0.95395 1.21201 1.01067 0.96336 1.00286 1.17269 0.90581 0.89339 0.89213 1.91588 1.86035 1.67239 1.63673 1.23518 0.74185 0.73338 0.94273 1.93109 1.48853 1.95575 1.79315 1.93132 1.74228 1.61210 1.87431 1.93074 1.80411 1.48073 1.97232 0.92780 0.76166 0.84072 0.84096 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 13.06 55.49 0.72 -26.23 15 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 15 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.27 -7.30 9.21 -15.06 -0.14 -7.43 15 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 15 9 N -0.68 -17.40 4.82 -54.55 -0.26 -17.67 15 10 C 0.18 3.90 2.43 -69.08 -0.17 3.74 15 11 H 0.11 2.20 7.21 -51.93 -0.37 1.83 15 12 C -0.17 -3.05 4.67 -104.49 -0.49 -3.54 15 13 C 0.15 2.31 7.24 -39.43 -0.29 2.02 15 14 F -0.13 -2.02 16.27 2.25 0.04 -1.98 15 15 C -0.17 -2.04 10.03 -39.50 -0.40 -2.43 15 16 C -0.06 -0.67 10.04 -39.61 -0.40 -1.07 15 17 C -0.17 -2.23 10.02 -39.51 -0.40 -2.63 15 18 C 0.16 2.74 6.45 -39.43 -0.25 2.49 15 19 F -0.11 -2.20 12.84 2.25 0.03 -2.17 15 20 C 0.41 8.72 2.82 37.16 0.10 8.82 15 21 F -0.19 -4.14 14.66 2.25 0.03 -4.11 15 22 F -0.18 -4.10 16.54 2.25 0.04 -4.06 15 23 F -0.21 -4.01 17.02 2.25 0.04 -3.97 15 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 25 H 0.40 10.65 5.36 -40.82 -0.22 10.43 15 26 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 28 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -30.30 267.39 -4.28 -34.58 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.41 Total: 4.68 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.52 Total: 0.01 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.46 Total: -43.90 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 0.17 Total: -16.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.30 -4.28 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096500240.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.903 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds