Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47097 * 269.99917 * 3 2 1 5 5 H 1.48507 * 109.47105 * 29.99629 * 3 2 1 6 6 H 1.48495 * 109.47383 * 149.99551 * 3 2 1 7 7 C 1.38811 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00029 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.46968 * 35.00268 * 10 9 7 12 12 C 1.50698 * 109.46972 * 155.00376 * 10 9 7 13 13 C 1.38415 * 120.02708 * 224.99912 * 12 10 9 14 14 F 1.35099 * 120.00946 * 359.97438 * 13 12 10 15 15 C 1.38474 * 119.97981 * 179.97438 * 13 12 10 16 16 C 1.38210 * 120.02023 * 0.28104 * 15 13 12 17 17 C 1.38201 * 120.05118 * 359.44081 * 16 15 13 18 18 C 1.38420 * 120.02535 * 44.97419 * 12 10 9 19 19 F 1.35097 * 120.01373 * 0.02562 * 18 12 10 20 20 C 1.52999 * 109.47016 * 274.99876 * 10 9 7 21 21 F 1.39899 * 109.47411 * 300.00475 * 20 10 9 22 22 F 1.39904 * 109.47042 * 60.00494 * 20 10 9 23 23 F 1.39896 * 109.47239 * 179.97438 * 20 10 9 24 24 H 0.96999 * 120.00575 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99781 * 0.02562 * 9 7 2 26 26 H 1.08002 * 119.98641 * 179.97438 * 15 13 12 27 27 H 1.08000 * 119.96986 * 179.70463 * 16 15 13 28 28 H 1.08002 * 119.98829 * 180.25980 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1943 -4.7351 0.6041 13 6 1.7285 -5.6150 1.5295 14 9 3.0250 -5.5077 1.8937 15 6 0.9335 -6.6052 2.0818 16 6 -0.3913 -6.7188 1.7050 17 6 -0.9273 -5.8372 0.7854 18 6 -0.1343 -4.8462 0.2318 19 9 -0.6570 -3.9881 -0.6713 20 6 2.4221 -4.0368 -1.4339 21 9 1.2533 -4.1738 -2.1904 22 9 3.2243 -3.0357 -1.9922 23 9 3.1222 -5.2480 -1.4329 24 1 -0.4851 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0016 26 1 1.3504 -7.2921 2.8036 27 1 -1.0093 -7.4944 2.1327 28 1 -1.9639 -5.9243 0.4949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096500240.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -220.930513 kcal Electronic energy + Delta-G solvation = -23140.315930 eV Core-core repulsion = 18798.050826 eV Total energy + Delta-G solvation = -4342.265104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.053 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.95502 -50.05764 -49.99899 -48.44197 -48.40021 -39.94040 -37.21559 -34.29431 -31.70493 -31.25657 -28.90857 -26.02182 -24.63377 -23.81289 -22.47599 -19.94411 -19.40047 -19.17093 -19.08584 -18.64784 -17.94982 -17.05758 -16.90714 -16.58936 -16.39165 -16.28919 -15.51195 -15.47350 -15.35621 -15.18904 -14.99460 -14.87648 -14.59955 -14.59032 -14.04320 -13.70225 -13.60919 -13.22211 -12.94372 -12.84220 -12.71687 -12.35017 -12.07611 -11.96344 -11.24776 -10.01513 -9.73066 -9.44352 -8.11484 -5.48713 -0.11922 -0.00492 1.44008 1.46553 1.55474 1.91669 2.34366 2.45762 2.84673 2.93345 3.01858 3.17621 3.34138 3.43218 3.65581 3.71112 3.88173 4.00181 4.24126 4.35165 4.76760 4.85841 5.02968 5.07770 5.19621 5.37641 5.78428 6.03935 7.14722 7.65909 7.98083 9.09744 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.007499 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.395062 B = 3733.163699 C = 4036.458727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.053 4.053 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.272 4.272 8 H 0.083 0.917 9 N -0.702 5.702 10 C 0.183 3.817 11 H 0.104 0.896 12 C -0.198 4.198 13 C 0.132 3.868 14 F -0.134 7.134 15 C -0.153 4.153 16 C -0.037 4.037 17 C -0.162 4.162 18 C 0.120 3.880 19 F -0.136 7.136 20 C 0.412 3.588 21 F -0.191 7.191 22 F -0.190 7.190 23 F -0.192 7.192 24 H 0.259 0.741 25 H 0.391 0.609 26 H 0.182 0.818 27 H 0.197 0.803 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -15.991 4.647 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.247 4.247 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.403 4.403 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.067 3.933 11 H 0.122 0.878 12 C -0.200 4.200 13 C 0.112 3.888 14 F -0.113 7.113 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.180 4.180 18 C 0.100 3.900 19 F -0.114 7.114 20 C 0.352 3.648 21 F -0.173 7.173 22 F -0.172 7.172 23 F -0.173 7.173 24 H 0.068 0.932 25 H 0.228 0.772 26 H 0.199 0.801 27 H 0.214 0.786 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.192 -15.744 4.621 16.409 hybrid contribution 0.389 1.490 -0.937 1.802 sum 0.197 -14.254 3.684 14.724 Atomic orbital electron populations 1.69835 1.06813 1.27085 1.56465 1.25717 0.96430 1.01484 1.01090 0.85054 0.77965 0.78465 0.77680 1.21217 1.21285 1.18846 1.19650 0.91823 0.84232 1.44575 0.89913 1.42733 1.06694 0.99326 1.85327 1.20109 0.97692 0.86679 0.88784 0.87834 1.19849 0.95337 1.00486 1.04377 1.17424 0.79252 0.96546 0.95617 1.91496 1.34220 1.95499 1.90044 1.21625 0.94701 0.98239 1.02583 1.21458 0.93907 0.97197 0.92869 1.21633 1.01878 0.94861 0.99671 1.17776 0.91100 0.90790 0.90337 1.91508 1.86353 1.68575 1.64990 1.23164 0.73994 0.73584 0.94010 1.93100 1.49158 1.95603 1.79393 1.93107 1.74535 1.61879 1.87659 1.93091 1.80029 1.47038 1.97173 0.93173 0.77210 0.80091 0.78622 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.10 13.06 21.65 0.28 -57.81 15 2 C -0.05 -3.03 5.50 84.86 0.47 -2.57 15 3 Si 0.98 45.91 29.55 68.60 2.03 47.94 15 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 15 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 7 C -0.27 -15.37 9.21 84.03 0.77 -14.59 15 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 15 9 N -0.70 -36.97 4.82 -326.50 -1.57 -38.54 15 10 C 0.18 8.01 2.43 44.24 0.11 8.11 15 11 H 0.10 4.46 7.21 -2.39 -0.02 4.44 15 12 C -0.20 -7.22 4.67 -19.78 -0.09 -7.31 15 13 C 0.13 3.86 7.24 22.37 0.16 4.02 15 14 F -0.13 -4.11 16.27 44.97 0.73 -3.37 15 15 C -0.15 -2.92 10.03 22.32 0.22 -2.70 15 16 C -0.04 -0.58 10.04 22.25 0.22 -0.36 15 17 C -0.16 -3.73 10.02 22.32 0.22 -3.51 15 18 C 0.12 4.16 6.45 22.37 0.14 4.30 15 19 F -0.14 -5.75 12.84 44.97 0.58 -5.17 15 20 C 0.41 17.97 2.82 71.98 0.20 18.17 15 21 F -0.19 -8.68 14.66 44.97 0.66 -8.02 15 22 F -0.19 -8.93 16.54 44.97 0.74 -8.19 15 23 F -0.19 -7.42 17.02 44.97 0.77 -6.65 15 24 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 25 H 0.39 21.78 5.36 -92.71 -0.50 21.28 15 26 H 0.18 2.06 8.06 -2.91 -0.02 2.04 15 27 H 0.20 1.08 8.06 -2.91 -0.02 1.06 15 28 H 0.17 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -69.13 267.39 7.39 -61.74 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.74 Total: 14.53 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 2.44 Total: 3.56 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -1.29 Total: -96.36 kcal Atomic # 9 Polarization: -34.89 SS G_CDS: 3.48 Total: -31.41 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -69.13 7.39 -61.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096500240.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.192 kcal (2) G-P(sol) polarization free energy of solvation -69.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds