Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.50704 * 109.46730 * 205.00050 * 10 9 7 13 13 C 1.38411 * 120.02607 * 314.71945 * 12 10 9 14 14 F 1.35103 * 120.01581 * 0.02562 * 13 12 10 15 15 C 1.38479 * 119.97444 * 179.75189 * 13 12 10 16 16 C 1.38211 * 120.02142 * 0.52717 * 15 13 12 17 17 C 1.38204 * 120.05084 * 359.75282 * 16 15 13 18 18 C 1.38423 * 120.02158 * 135.00467 * 12 10 9 19 19 F 1.35096 * 120.01299 * 359.97438 * 18 12 10 20 20 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 21 21 F 1.39902 * 109.47047 * 59.99887 * 20 10 9 22 22 F 1.39904 * 109.47061 * 179.97438 * 20 10 9 23 23 F 1.39899 * 109.47041 * 300.00058 * 20 10 9 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 26 26 H 1.07994 * 119.99085 * 180.27759 * 15 13 12 27 27 H 1.08005 * 119.97098 * 179.76509 * 16 15 13 28 28 H 1.08008 * 119.98507 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 1.1938 -4.7324 -0.6196 13 6 -0.1330 -4.8490 -0.2432 14 9 -0.6544 -3.9981 0.6676 15 6 -0.9275 -5.8345 -0.8046 16 6 -0.3930 -6.7084 -1.7325 17 6 0.9333 -6.5966 -2.1047 18 6 1.7281 -5.6083 -1.5488 19 9 3.0244 -5.4990 -1.9132 20 6 2.4219 -4.0431 1.4215 21 9 1.2530 -4.1834 2.1774 22 9 3.1208 -5.2550 1.4151 23 9 3.2240 -3.0445 1.9841 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0068 26 1 -1.9639 -5.9228 -0.5145 27 1 -1.0124 -7.4791 -2.1670 28 1 1.3499 -7.2804 -2.8296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096500241.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -202.547257 kcal Electronic energy + Delta-G solvation = -23140.043531 eV Core-core repulsion = 18798.575585 eV Total energy + Delta-G solvation = -4341.467946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.053 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.21790 -48.84510 -48.59662 -46.71065 -46.58132 -38.78220 -35.49902 -32.49007 -30.21419 -30.06019 -27.23865 -24.09627 -23.19705 -22.62489 -20.95696 -18.25250 -17.85683 -17.59354 -17.30585 -17.11700 -16.46091 -15.76577 -15.54991 -15.36338 -14.99855 -14.57934 -14.22785 -13.86579 -13.64297 -13.42261 -13.19796 -13.09959 -12.81505 -12.80660 -12.61733 -12.54470 -12.06118 -11.81215 -11.54047 -11.21694 -10.92809 -10.90418 -10.21544 -9.99839 -9.26756 -8.80942 -8.61781 -7.41806 -6.02276 -3.35782 1.01098 1.09302 3.31037 3.38878 3.40455 3.43164 3.72166 4.03755 4.33166 4.45822 4.54347 4.67735 4.80768 4.85794 5.05417 5.17356 5.25473 5.50012 5.71150 5.80238 5.84772 6.01350 6.07245 6.18867 6.23595 6.85238 7.52123 8.09895 9.25207 9.63647 10.02531 11.17646 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.007498 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.818662 B = 3733.566406 C = 4035.255956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.005 3.995 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.082 0.918 9 N -0.685 5.685 10 C 0.183 3.817 11 H 0.106 0.894 12 C -0.166 4.166 13 C 0.156 3.844 14 F -0.107 7.107 15 C -0.170 4.170 16 C -0.063 4.063 17 C -0.171 4.171 18 C 0.148 3.852 19 F -0.127 7.127 20 C 0.407 3.593 21 F -0.187 7.187 22 F -0.206 7.206 23 F -0.178 7.178 24 H 0.262 0.738 25 H 0.399 0.601 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -13.634 -3.222 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.194 4.194 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.065 3.935 11 H 0.124 0.876 12 C -0.169 4.169 13 C 0.136 3.864 14 F -0.085 7.085 15 C -0.189 4.189 16 C -0.082 4.082 17 C -0.190 4.190 18 C 0.128 3.872 19 F -0.105 7.105 20 C 0.347 3.653 21 F -0.169 7.169 22 F -0.188 7.188 23 F -0.160 7.160 24 H 0.072 0.928 25 H 0.238 0.762 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.058 -13.328 -3.178 13.701 hybrid contribution 0.330 1.023 0.495 1.183 sum 0.272 -12.305 -2.683 12.597 Atomic orbital electron populations 1.69697 1.05394 1.26688 1.54226 1.24894 0.95597 0.98288 1.00592 0.86045 0.78935 0.82544 0.77798 1.21143 1.21349 1.20104 1.19346 0.91607 0.83050 1.45567 0.90007 1.42689 1.06992 0.98426 1.84164 1.20035 0.97284 0.86725 0.89425 0.87640 1.19937 0.95079 0.99745 1.02166 1.17268 0.90620 0.89478 0.89048 1.91592 1.86089 1.67682 1.63182 1.21203 1.01052 0.96507 1.00123 1.20789 0.94136 0.97833 0.95400 1.21088 0.94685 0.99782 1.03488 1.17092 0.79007 0.95689 0.95457 1.91515 1.33646 1.95318 1.90026 1.23513 0.74189 0.73381 0.94229 1.93110 1.48851 1.95549 1.79343 1.93076 1.80479 1.48023 1.97217 1.93133 1.74226 1.61350 1.87266 0.92784 0.76180 0.83962 0.84095 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 13.06 55.49 0.72 -26.23 15 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 15 3 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.27 -7.29 9.21 -15.06 -0.14 -7.43 15 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 15 9 N -0.68 -17.40 4.82 -54.55 -0.26 -17.66 15 10 C 0.18 3.90 2.43 -69.08 -0.17 3.73 15 11 H 0.11 2.20 7.21 -51.93 -0.37 1.82 15 12 C -0.17 -3.05 4.67 -104.49 -0.49 -3.54 15 13 C 0.16 2.74 6.45 -39.43 -0.25 2.49 15 14 F -0.11 -2.20 12.84 2.25 0.03 -2.17 15 15 C -0.17 -2.23 10.03 -39.50 -0.40 -2.63 15 16 C -0.06 -0.67 10.04 -39.60 -0.40 -1.07 15 17 C -0.17 -2.04 10.02 -39.51 -0.40 -2.44 15 18 C 0.15 2.31 7.25 -39.43 -0.29 2.02 15 19 F -0.13 -2.01 16.27 2.25 0.04 -1.98 15 20 C 0.41 8.72 2.82 37.16 0.10 8.83 15 21 F -0.19 -4.14 14.63 2.25 0.03 -4.11 15 22 F -0.21 -4.01 17.02 2.25 0.04 -3.97 15 23 F -0.18 -4.10 16.54 2.25 0.04 -4.07 15 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 25 H 0.40 10.65 5.39 -40.82 -0.22 10.43 15 26 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.14 0.96 8.06 -52.48 -0.42 0.54 15 28 H 0.14 1.25 8.06 -52.48 -0.42 0.83 15 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -30.30 267.38 -4.28 -34.58 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -1.41 Total: 4.69 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.52 Total: 0.01 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.46 Total: -43.89 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 0.17 Total: -16.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.30 -4.28 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096500241.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.963 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds