Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39462 * 119.73727 * 267.53269 * 3 2 1 5 5 C 1.38495 * 119.05105 * 179.97438 * 4 3 2 6 6 C 1.38698 * 118.50409 * 0.02562 * 5 4 3 7 7 S 1.76207 * 120.30478 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40015 * 336.45450 * 7 6 5 9 9 O 1.42102 * 106.39905 * 203.54261 * 7 6 5 10 10 N 1.65599 * 107.21714 * 90.00047 * 7 6 5 11 11 C 1.46499 * 120.00012 * 65.00092 * 10 7 6 12 12 C 1.53000 * 109.46840 * 165.00017 * 11 10 7 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00636 * 17 15 13 19 19 H 1.48494 * 109.47178 * 210.00332 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00579 * 17 15 13 21 21 C 1.38465 * 119.38654 * 0.27196 * 6 5 4 22 22 N 1.31593 * 120.90977 * 359.40874 * 21 6 5 23 23 H 1.07996 * 120.47333 * 359.97438 * 4 3 2 24 24 H 1.07997 * 120.74315 * 179.97438 * 5 4 3 25 25 H 0.97001 * 119.99797 * 244.99292 * 10 7 6 26 26 H 1.09002 * 109.47391 * 44.99686 * 11 10 7 27 27 H 1.09001 * 109.46813 * 284.99743 * 11 10 7 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 30 30 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 31 31 H 1.07995 * 119.54407 * 179.72773 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2597 0.0531 1.2098 5 6 4.6446 0.0524 1.1933 6 6 5.2918 -0.0001 -0.0323 7 16 7.0523 -0.0039 -0.1086 8 8 7.5075 0.5925 1.0982 9 8 7.3990 0.4860 -1.3966 10 7 7.5414 -1.5853 -0.0624 11 6 7.1962 -2.4912 -1.1608 12 6 8.0570 -3.7529 -1.0709 13 6 7.7014 -4.6851 -2.2004 14 1 6.9382 -4.4053 -2.9115 15 6 8.3512 -5.8946 -2.3266 16 7 9.2810 -6.2350 -1.4610 17 14 7.9100 -7.0503 -3.7263 18 1 8.7643 -6.7508 -4.9035 19 1 8.1327 -8.4545 -3.2976 20 1 6.4824 -6.8643 -4.0904 21 6 4.5419 -0.0442 -1.1954 22 7 3.2267 -0.0487 -1.1519 23 1 2.7231 0.0936 2.1462 24 1 5.2077 0.0928 2.1139 25 1 8.0566 -1.9118 0.6918 26 1 7.3790 -1.9937 -2.1133 27 1 6.1432 -2.7639 -1.0895 28 1 9.1099 -3.4803 -1.1421 29 1 7.8741 -4.2504 -0.1185 30 1 9.7384 -7.0857 -1.5500 31 1 5.0433 -0.0807 -2.1512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131287806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -9.931117 kcal Electronic energy + Delta-G solvation = -18717.258090 eV Core-core repulsion = 15512.132484 eV Total energy + Delta-G solvation = -3205.125606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78371 -37.28213 -37.00307 -35.88029 -35.55883 -33.29050 -32.82788 -32.25588 -29.25441 -25.71559 -24.62003 -24.31418 -21.28081 -20.10967 -19.64157 -18.14011 -17.44033 -17.21600 -16.35680 -15.63286 -15.35769 -15.16141 -14.66613 -14.52580 -14.16837 -13.93854 -13.80995 -13.36313 -13.26209 -13.18355 -12.66968 -12.14175 -12.04874 -11.91850 -11.55241 -11.38002 -11.16646 -10.71812 -10.69874 -10.54754 -10.17711 -9.93786 -9.68100 -9.34781 -9.10395 -8.47446 -6.14113 -4.17994 -0.34448 0.37429 0.64596 2.04212 2.19755 2.94832 3.06069 3.26232 3.31650 3.33265 3.36072 3.70019 3.98405 4.13061 4.35554 4.36586 4.44629 4.76387 5.07989 5.15001 5.23216 5.35282 5.58254 5.86503 6.04077 6.31261 6.59075 6.84201 7.11970 7.21863 7.47375 7.55553 7.83527 8.20225 8.87829 9.47440 10.97149 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.004633 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.089718 B = 6041.532833 C = 7252.428634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C 0.262 3.738 3 C 0.241 3.759 4 C -0.143 4.143 5 C 0.032 3.968 6 C -0.711 4.711 7 S 2.697 3.303 8 O -0.962 6.962 9 O -0.948 6.948 10 N -1.106 6.106 11 C 0.114 3.886 12 C 0.018 3.982 13 C -0.526 4.526 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.211 3.789 22 N -0.463 5.463 23 H 0.157 0.843 24 H 0.166 0.834 25 H 0.420 0.580 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 12.378 6.621 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.051 5.051 2 C -0.056 4.056 3 C 0.103 3.897 4 C -0.166 4.166 5 C 0.006 3.994 6 C -0.797 4.797 7 S 2.781 3.219 8 O -0.952 6.952 9 O -0.938 6.938 10 N -0.869 5.869 11 C -0.010 4.010 12 C -0.021 4.021 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.051 3.949 22 N -0.173 5.173 23 H 0.174 0.826 24 H 0.183 0.817 25 H 0.255 0.745 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.655 13.004 5.664 17.158 hybrid contribution 0.173 -1.232 0.362 1.296 sum -9.483 11.772 6.026 16.273 Atomic orbital electron populations 1.81272 1.11350 1.05960 1.06481 1.24945 0.91623 0.94908 0.94091 1.16664 0.86326 0.96185 0.90541 1.22125 0.95075 1.00916 0.98524 1.21399 0.94045 0.86604 0.97386 1.32604 1.30818 1.15746 1.00487 1.02018 0.72845 0.73110 0.73878 1.93582 1.79177 1.75354 1.47040 1.93614 1.80800 1.78484 1.40866 1.55495 1.68640 1.29655 1.33070 1.21749 0.99755 0.92752 0.86778 1.19283 0.95168 0.89553 0.98057 1.21071 1.21472 1.02172 1.11823 0.92192 1.24988 0.94879 0.98029 0.96272 1.69946 1.24553 1.22758 1.35803 0.86539 0.78932 0.79977 0.82248 1.20479 1.21205 1.19766 1.22727 0.88017 0.86222 0.97944 1.67731 1.10450 1.11894 1.27227 0.82563 0.81671 0.74465 0.90901 0.92894 0.95413 0.95735 0.92765 0.79475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.66 18.54 41.84 0.78 -3.89 16 2 C 0.26 2.84 15.53 -22.47 -0.35 2.49 16 3 C 0.24 2.44 6.58 -85.07 -0.56 1.88 16 4 C -0.14 -1.09 9.80 -39.03 -0.38 -1.48 16 5 C 0.03 0.27 9.64 -39.32 -0.38 -0.11 16 6 C -0.71 -7.47 5.97 -39.33 -0.23 -7.71 16 7 S 2.70 33.59 5.75 -107.50 -0.62 32.98 16 8 O -0.96 -13.20 17.35 -57.17 -0.99 -14.19 16 9 O -0.95 -14.41 16.76 -57.17 -0.96 -15.37 16 10 N -1.11 -15.13 6.00 -10.61 -0.06 -15.19 16 11 C 0.11 1.95 6.16 -4.04 -0.02 1.93 16 12 C 0.02 0.41 5.12 -27.88 -0.14 0.27 16 13 C -0.53 -13.59 9.11 -34.44 -0.31 -13.90 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 17 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.21 2.34 10.68 -17.57 -0.19 2.16 16 22 N -0.46 -5.44 10.28 -11.16 -0.11 -5.55 16 23 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 24 H 0.17 0.99 7.70 -52.49 -0.40 0.59 16 25 H 0.42 5.25 8.65 -34.47 -0.30 4.95 16 26 H 0.07 1.24 7.75 -51.93 -0.40 0.83 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.19 1.84 7.61 -52.49 -0.40 1.44 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -32.56 303.11 -7.10 -39.65 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -2.74 Total: -1.16 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.67 Total: -12.94 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 1.33 Total: -49.03 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.95 Total: -29.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 33.59 SS G_CDS: -0.62 Total: 32.98 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.56 -7.10 -39.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131287806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.722 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds