Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39462 * 119.73727 * 267.53269 * 3 2 1 5 5 C 1.38495 * 119.05105 * 179.97438 * 4 3 2 6 6 C 1.38698 * 118.50409 * 0.02562 * 5 4 3 7 7 S 1.76207 * 120.30478 * 180.02562 * 6 5 4 8 8 O 1.42097 * 106.40015 * 336.45450 * 7 6 5 9 9 O 1.42102 * 106.39905 * 203.54261 * 7 6 5 10 10 N 1.65599 * 107.21714 * 90.00047 * 7 6 5 11 11 C 1.46499 * 120.00012 * 65.00092 * 10 7 6 12 12 C 1.53000 * 109.46840 * 165.00017 * 11 10 7 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00636 * 17 15 13 19 19 H 1.48494 * 109.47178 * 210.00332 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00579 * 17 15 13 21 21 C 1.38465 * 119.38654 * 0.27196 * 6 5 4 22 22 N 1.31593 * 120.90977 * 359.40874 * 21 6 5 23 23 H 1.07996 * 120.47333 * 359.97438 * 4 3 2 24 24 H 1.07997 * 120.74315 * 179.97438 * 5 4 3 25 25 H 0.97001 * 119.99797 * 244.99292 * 10 7 6 26 26 H 1.09002 * 109.47391 * 44.99686 * 11 10 7 27 27 H 1.09001 * 109.46813 * 284.99743 * 11 10 7 28 28 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 29 29 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 30 30 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 31 31 H 1.07995 * 119.54407 * 179.72773 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2597 0.0531 1.2098 5 6 4.6446 0.0524 1.1933 6 6 5.2918 -0.0001 -0.0323 7 16 7.0523 -0.0039 -0.1086 8 8 7.5075 0.5925 1.0982 9 8 7.3990 0.4860 -1.3966 10 7 7.5414 -1.5853 -0.0624 11 6 7.1962 -2.4912 -1.1608 12 6 8.0570 -3.7529 -1.0709 13 6 7.7014 -4.6851 -2.2004 14 1 6.9382 -4.4053 -2.9115 15 6 8.3512 -5.8946 -2.3266 16 7 9.2810 -6.2350 -1.4610 17 14 7.9100 -7.0503 -3.7263 18 1 8.7643 -6.7508 -4.9035 19 1 8.1327 -8.4545 -3.2976 20 1 6.4824 -6.8643 -4.0904 21 6 4.5419 -0.0442 -1.1954 22 7 3.2267 -0.0487 -1.1519 23 1 2.7231 0.0936 2.1462 24 1 5.2077 0.0928 2.1139 25 1 8.0566 -1.9118 0.6918 26 1 7.3790 -1.9937 -2.1133 27 1 6.1432 -2.7639 -1.0895 28 1 9.1099 -3.4803 -1.1421 29 1 7.8741 -4.2504 -0.1185 30 1 9.7384 -7.0857 -1.5500 31 1 5.0433 -0.0807 -2.1512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131287806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -34.576655 kcal Electronic energy + Delta-G solvation = -18718.326801 eV Core-core repulsion = 15512.132484 eV Total energy + Delta-G solvation = -3206.194316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55500 -38.38118 -37.88690 -37.00100 -36.95339 -34.69125 -34.05269 -33.03051 -30.95825 -26.53329 -26.37437 -25.08552 -22.92774 -20.97060 -20.58278 -19.20621 -18.50040 -18.25409 -18.00017 -16.84998 -16.41533 -16.09126 -15.99094 -15.54964 -15.44825 -15.16067 -14.57869 -14.39594 -14.22414 -14.13089 -14.02956 -13.36496 -13.25913 -13.21888 -13.13484 -12.95068 -12.47915 -12.42112 -12.24256 -11.50242 -11.42230 -11.25926 -10.99670 -10.68211 -10.57625 -10.27749 -8.17212 -6.26551 -1.14525 -0.64132 -0.05535 1.20130 1.36785 1.46083 1.47143 1.56911 2.00463 2.18426 2.45817 2.49624 2.72964 3.14901 3.18713 3.37168 3.67873 3.72018 3.92274 4.25731 4.42357 4.48020 4.61518 4.67115 4.90507 5.03873 5.16835 5.56237 5.71199 5.86973 6.01429 6.08487 6.27848 6.34577 6.90314 7.42849 8.94564 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.004633 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.089718 B = 6041.532833 C = 7252.428634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.282 3.718 3 C 0.228 3.772 4 C -0.121 4.121 5 C 0.036 3.964 6 C -0.711 4.711 7 S 2.722 3.278 8 O -0.970 6.970 9 O -0.977 6.977 10 N -1.107 6.107 11 C 0.129 3.871 12 C 0.018 3.982 13 C -0.541 4.541 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.201 3.799 22 N -0.486 5.486 23 H 0.196 0.804 24 H 0.195 0.805 25 H 0.425 0.575 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.003 0.997 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 12.852 7.260 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.036 4.036 3 C 0.091 3.909 4 C -0.144 4.144 5 C 0.010 3.990 6 C -0.800 4.800 7 S 2.810 3.190 8 O -0.960 6.960 9 O -0.967 6.967 10 N -0.869 5.869 11 C 0.003 3.997 12 C -0.021 4.021 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.187 1.187 21 C 0.040 3.960 22 N -0.197 5.197 23 H 0.214 0.786 24 H 0.212 0.788 25 H 0.261 0.739 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.768 13.485 6.304 18.372 hybrid contribution 0.500 -1.312 0.227 1.423 sum -10.268 12.172 6.531 17.212 Atomic orbital electron populations 1.81294 1.12267 1.07240 1.07524 1.25009 0.91618 0.93860 0.93111 1.16831 0.85886 0.96975 0.91235 1.22506 0.94698 0.98142 0.99036 1.21848 0.94588 0.85083 0.97503 1.32219 1.28930 1.17296 1.01594 1.01032 0.73198 0.71957 0.72831 1.93569 1.80050 1.75148 1.47269 1.93577 1.82025 1.78802 1.42318 1.55335 1.69464 1.29614 1.32447 1.21366 0.99458 0.90910 0.87948 1.19164 0.94771 0.91652 0.96475 1.21601 1.21157 1.02676 1.12554 0.91368 1.25843 0.94935 0.99915 0.98650 1.70066 1.25897 1.23310 1.37726 0.85544 0.79092 0.77739 0.79260 1.20114 1.21209 1.18661 1.22824 0.87972 0.86766 0.98473 1.67666 1.10734 1.12850 1.28425 0.78647 0.78831 0.73893 0.90831 0.91123 0.97886 0.97148 0.92834 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.66 18.54 19.00 0.35 -9.31 16 2 C 0.28 5.63 15.53 88.33 1.37 7.00 16 3 C 0.23 4.09 6.58 40.54 0.27 4.36 16 4 C -0.12 -1.39 9.80 22.63 0.22 -1.17 16 5 C 0.04 0.48 9.64 22.44 0.22 0.69 16 6 C -0.71 -13.36 5.97 22.43 0.13 -13.23 16 7 S 2.72 63.80 5.75 -56.49 -0.32 63.47 16 8 O -0.97 -24.69 17.35 -128.00 -2.22 -26.91 16 9 O -0.98 -28.95 16.76 -128.00 -2.15 -31.10 16 10 N -1.11 -29.15 6.00 -187.49 -1.12 -30.27 16 11 C 0.13 4.30 6.16 86.38 0.53 4.83 16 12 C 0.02 0.83 5.12 29.85 0.15 0.98 16 13 C -0.54 -27.88 9.11 25.60 0.23 -27.65 16 14 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -53.16 13.29 21.45 0.28 -52.87 16 17 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 C 0.20 4.15 10.68 84.78 0.91 5.06 16 22 N -0.49 -10.69 10.28 -189.22 -1.94 -12.63 16 23 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 24 H 0.19 1.45 7.70 -2.91 -0.02 1.43 16 25 H 0.42 10.31 8.65 -96.75 -0.84 9.47 16 26 H 0.07 2.45 7.75 -2.39 -0.02 2.43 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 31 H 0.19 3.61 7.61 -2.91 -0.02 3.59 16 Total: -1.00 -69.85 303.11 -0.25 -70.10 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.35 Total: 4.03 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.50 Total: -18.40 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -2.43 Total: -105.09 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -4.37 Total: -58.01 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 63.80 SS G_CDS: -0.32 Total: 63.47 kcal Total: -69.85 -0.25 -70.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131287806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.524 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds