Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.32824 * 119.73399 * 174.35948 * 3 2 1 5 5 C 1.31560 * 121.61841 * 179.72447 * 4 3 2 6 6 C 1.38506 * 120.91404 * 0.02562 * 5 4 3 7 7 C 1.38659 * 119.38052 * 359.97438 * 6 5 4 8 8 C 1.38535 * 118.50573 * 359.97438 * 7 6 5 9 9 S 1.76201 * 120.47130 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40221 * 228.53974 * 9 8 7 11 11 O 1.42101 * 106.40304 * 1.45831 * 9 8 7 12 12 N 1.65596 * 107.21784 * 114.99826 * 9 8 7 13 13 C 1.46495 * 120.00096 * 64.99962 * 12 9 8 14 14 C 1.53004 * 109.47316 * 165.00031 * 13 12 9 15 15 C 1.50704 * 109.46964 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99742 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99858 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47354 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.46939 * 240.00102 * 19 17 15 23 23 H 1.07999 * 119.54196 * 180.02562 * 5 4 3 24 24 H 1.07998 * 120.30767 * 179.97438 * 6 5 4 25 25 H 1.07995 * 120.74445 * 179.97438 * 7 6 5 26 26 H 0.96996 * 119.99977 * 245.00035 * 12 9 8 27 27 H 1.09007 * 109.47239 * 285.00285 * 13 12 9 28 28 H 1.09001 * 109.47051 * 44.99634 * 13 12 9 29 29 H 1.09000 * 109.46571 * 300.00075 * 14 13 12 30 30 H 1.08995 * 109.46761 * 60.00064 * 14 13 12 31 31 H 0.97005 * 119.99969 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2263 1.1487 -0.1134 5 6 4.5411 1.1929 -0.1123 6 6 5.2919 0.0351 0.0075 7 6 4.6453 -1.1855 0.1283 8 6 3.2601 -1.2031 0.1253 9 16 2.3854 -2.7252 0.2763 10 8 1.4063 -2.7292 -0.7535 11 8 3.3691 -3.7409 0.4174 12 7 1.5569 -2.6744 1.7092 13 6 0.4830 -1.6965 1.9001 14 6 -0.3535 -2.0890 3.1196 15 6 -1.4578 -1.0826 3.3163 16 1 -1.5538 -0.2469 2.6390 17 6 -2.3457 -1.2288 4.3610 18 7 -2.2290 -2.2467 5.1855 19 14 -3.7150 0.0182 4.6044 20 1 -3.6290 1.0600 3.5496 21 1 -5.0296 -0.6670 4.5180 22 1 -3.5745 0.6533 5.9394 23 1 5.0420 2.1451 -0.2060 24 1 6.3708 0.0827 0.0069 25 1 5.2089 -2.1019 0.2226 26 1 1.7827 -3.2921 2.4221 27 1 0.9152 -0.7084 2.0587 28 1 -0.1524 -1.6771 1.0146 29 1 -0.7856 -3.0770 2.9609 30 1 0.2820 -2.1082 4.0050 31 1 -2.8535 -2.3494 5.9207 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236408993.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 12.587452 kcal Electronic energy + Delta-G solvation = -19537.754697 eV Core-core repulsion = 16333.605570 eV Total energy + Delta-G solvation = -3204.149127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73205 -37.62628 -36.74849 -35.86249 -35.22422 -33.22580 -32.77437 -32.17695 -29.20441 -25.35761 -24.61191 -24.51116 -21.31407 -20.06782 -19.50715 -18.14077 -17.28851 -17.03854 -16.31534 -15.86284 -15.72853 -14.90140 -14.55074 -14.30977 -14.20655 -14.03193 -13.50932 -13.09798 -12.96404 -12.86138 -12.45091 -12.12484 -12.01358 -11.87091 -11.54004 -11.19003 -11.02585 -10.71413 -10.62240 -10.48882 -10.10873 -9.82106 -9.51278 -9.24756 -9.07816 -8.41373 -6.07394 -4.09916 -0.12619 0.35539 0.54484 2.38530 2.58514 3.00640 3.16967 3.29877 3.37578 3.43749 3.44654 3.67177 4.06320 4.27231 4.37001 4.43443 4.68218 4.77571 4.86399 5.27575 5.29839 5.47152 5.59428 5.91972 6.01212 6.31400 6.63141 7.13350 7.24305 7.32857 7.52243 7.59656 7.91220 8.28229 8.96260 9.54853 11.04167 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.005427 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.164580 B = 5158.450994 C = 5789.187954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.298 5.298 2 C 0.202 3.798 3 C 0.312 3.688 4 N -0.463 5.463 5 C 0.154 3.846 6 C -0.173 4.173 7 C 0.024 3.976 8 C -0.691 4.691 9 S 2.688 3.312 10 O -0.943 6.943 11 O -0.959 6.959 12 N -1.104 6.104 13 C 0.101 3.899 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.176 0.824 24 H 0.155 0.845 25 H 0.166 0.834 26 H 0.421 0.579 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.259 3.596 -9.381 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N 0.025 4.975 2 C -0.116 4.116 3 C 0.172 3.828 4 N -0.174 5.174 5 C -0.004 4.004 6 C -0.194 4.194 7 C -0.002 4.002 8 C -0.779 4.779 9 S 2.773 3.227 10 O -0.932 6.932 11 O -0.949 6.949 12 N -0.867 5.867 13 C -0.023 4.023 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.193 0.807 24 H 0.173 0.827 25 H 0.183 0.817 26 H 0.257 0.743 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.946 3.802 -10.079 19.244 hybrid contribution 0.584 0.461 0.927 1.188 sum 16.530 4.262 -9.152 19.369 Atomic orbital electron populations 1.81320 1.10590 1.02666 1.02921 1.24767 0.91731 0.97741 0.97322 1.15719 0.86119 0.88621 0.92378 1.67715 1.10684 1.26970 1.11996 1.23190 0.88347 0.99384 0.89442 1.22512 1.02532 0.93218 1.01122 1.21439 0.91243 1.00222 0.87286 1.32255 1.07591 1.21593 1.16452 1.02259 0.73500 0.72997 0.73963 1.93647 1.58512 1.85671 1.55374 1.93571 1.61009 1.53878 1.86404 1.55512 1.48035 1.48534 1.34636 1.22519 0.87225 0.88751 1.03847 1.19294 0.94158 0.97983 0.90410 1.21120 1.12263 1.10042 1.12464 0.91986 1.24979 0.97792 0.95679 0.95763 1.69968 1.37447 1.29430 1.16445 0.86486 0.81864 0.81422 0.78008 1.19534 1.20861 1.20990 0.80674 0.82747 0.81666 0.74319 0.93350 0.89952 0.95346 0.95711 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.30 -5.94 15.62 41.84 0.65 -5.29 16 2 C 0.20 3.54 10.02 -22.47 -0.23 3.32 16 3 C 0.31 4.50 6.53 -85.07 -0.56 3.95 16 4 N -0.46 -5.77 10.28 -11.16 -0.11 -5.88 16 5 C 0.15 1.22 11.18 -17.57 -0.20 1.02 16 6 C -0.17 -1.13 10.11 -39.33 -0.40 -1.52 16 7 C 0.02 0.22 9.66 -39.32 -0.38 -0.16 16 8 C -0.69 -8.84 5.94 -39.04 -0.23 -9.07 16 9 S 2.69 40.79 5.44 -107.50 -0.59 40.21 16 10 O -0.94 -17.31 16.25 -57.17 -0.93 -18.24 16 11 O -0.96 -14.60 17.05 -57.17 -0.97 -15.58 16 12 N -1.10 -18.35 6.00 -10.61 -0.06 -18.41 16 13 C 0.10 2.09 3.92 -4.04 -0.02 2.07 16 14 C 0.02 0.51 5.12 -27.88 -0.14 0.37 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 24 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 25 H 0.17 1.13 7.44 -52.49 -0.39 0.74 16 26 H 0.42 6.21 8.65 -34.47 -0.30 5.91 16 27 H 0.05 0.96 6.22 -51.92 -0.32 0.64 16 28 H 0.08 1.81 5.29 -51.93 -0.27 1.54 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -35.15 287.87 -7.03 -42.19 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -2.52 Total: -1.14 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.56 Total: -13.35 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.21 Total: -55.25 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.90 Total: -33.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 40.79 SS G_CDS: -0.59 Total: 40.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.15 -7.03 -42.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236408993.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.776 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds