Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.32824 * 119.73399 * 174.35948 * 3 2 1 5 5 C 1.31560 * 121.61841 * 179.72447 * 4 3 2 6 6 C 1.38506 * 120.91404 * 0.02562 * 5 4 3 7 7 C 1.38659 * 119.38052 * 359.97438 * 6 5 4 8 8 C 1.38535 * 118.50573 * 359.97438 * 7 6 5 9 9 S 1.76201 * 120.47130 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40221 * 228.53974 * 9 8 7 11 11 O 1.42101 * 106.40304 * 1.45831 * 9 8 7 12 12 N 1.65596 * 107.21784 * 114.99826 * 9 8 7 13 13 C 1.46495 * 120.00096 * 64.99962 * 12 9 8 14 14 C 1.53004 * 109.47316 * 165.00031 * 13 12 9 15 15 C 1.50704 * 109.46964 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99742 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99858 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47125 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47354 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.46939 * 240.00102 * 19 17 15 23 23 H 1.07999 * 119.54196 * 180.02562 * 5 4 3 24 24 H 1.07998 * 120.30767 * 179.97438 * 6 5 4 25 25 H 1.07995 * 120.74445 * 179.97438 * 7 6 5 26 26 H 0.96996 * 119.99977 * 245.00035 * 12 9 8 27 27 H 1.09007 * 109.47239 * 285.00285 * 13 12 9 28 28 H 1.09001 * 109.47051 * 44.99634 * 13 12 9 29 29 H 1.09000 * 109.46571 * 300.00075 * 14 13 12 30 30 H 1.08995 * 109.46761 * 60.00064 * 14 13 12 31 31 H 0.97005 * 119.99969 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2263 1.1487 -0.1134 5 6 4.5411 1.1929 -0.1123 6 6 5.2919 0.0351 0.0075 7 6 4.6453 -1.1855 0.1283 8 6 3.2601 -1.2031 0.1253 9 16 2.3854 -2.7252 0.2763 10 8 1.4063 -2.7292 -0.7535 11 8 3.3691 -3.7409 0.4174 12 7 1.5569 -2.6744 1.7092 13 6 0.4830 -1.6965 1.9001 14 6 -0.3535 -2.0890 3.1196 15 6 -1.4578 -1.0826 3.3163 16 1 -1.5538 -0.2469 2.6390 17 6 -2.3457 -1.2288 4.3610 18 7 -2.2290 -2.2467 5.1855 19 14 -3.7150 0.0182 4.6044 20 1 -3.6290 1.0600 3.5496 21 1 -5.0296 -0.6670 4.5180 22 1 -3.5745 0.6533 5.9394 23 1 5.0420 2.1451 -0.2060 24 1 6.3708 0.0827 0.0069 25 1 5.2089 -2.1019 0.2226 26 1 1.7827 -3.2921 2.4221 27 1 0.9152 -0.7084 2.0587 28 1 -0.1524 -1.6771 1.0146 29 1 -0.7856 -3.0770 2.9609 30 1 0.2820 -2.1082 4.0050 31 1 -2.8535 -2.3494 5.9207 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236408993.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -16.228972 kcal Electronic energy + Delta-G solvation = -19539.004271 eV Core-core repulsion = 16333.605570 eV Total energy + Delta-G solvation = -3205.398701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.56211 -38.94479 -38.09239 -37.16511 -36.82396 -34.81306 -34.02464 -33.03525 -31.11794 -26.54730 -26.26107 -25.35764 -23.19228 -21.10868 -20.67630 -19.34654 -18.53431 -18.34968 -17.86007 -17.22909 -16.62387 -16.48715 -16.01767 -15.75817 -15.56691 -15.05328 -14.67283 -14.45195 -14.23847 -14.18093 -13.91883 -13.50557 -13.41401 -13.29612 -13.13518 -12.93477 -12.57524 -12.49189 -12.37129 -11.57007 -11.48338 -11.35896 -10.97503 -10.69091 -10.54946 -10.47694 -8.26149 -6.35806 -1.05858 -0.80675 -0.20639 1.12994 1.36132 1.37706 1.50961 1.58243 1.74780 2.09882 2.35408 2.38218 2.61133 3.03955 3.08335 3.54240 3.64532 3.78614 3.99651 4.03583 4.25556 4.28384 4.63558 4.67306 4.80366 4.86560 5.34614 5.39997 5.51377 5.73167 5.91567 5.98720 6.16086 6.43415 6.77784 7.32915 8.86084 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.005427 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.164580 B = 5158.450994 C = 5789.187954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C 0.220 3.780 3 C 0.278 3.722 4 N -0.484 5.484 5 C 0.154 3.846 6 C -0.135 4.135 7 C 0.018 3.982 8 C -0.691 4.691 9 S 2.703 3.297 10 O -0.981 6.981 11 O -0.958 6.958 12 N -1.107 6.107 13 C 0.121 3.879 14 C 0.023 3.977 15 C -0.541 4.541 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.272 1.272 23 H 0.223 0.777 24 H 0.211 0.789 25 H 0.191 0.809 26 H 0.428 0.572 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.005 0.995 30 H 0.015 0.985 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.503 5.081 -9.656 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.040 5.040 2 C -0.097 4.097 3 C 0.138 3.862 4 N -0.196 5.196 5 C -0.003 4.003 6 C -0.156 4.156 7 C -0.008 4.008 8 C -0.784 4.784 9 S 2.792 3.208 10 O -0.971 6.971 11 O -0.948 6.948 12 N -0.869 5.869 13 C -0.005 4.005 14 C -0.015 4.015 15 C -0.580 4.580 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.197 1.197 23 H 0.239 0.761 24 H 0.228 0.772 25 H 0.208 0.792 26 H 0.265 0.735 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.173 5.236 -10.343 22.405 hybrid contribution -0.150 0.050 0.957 0.970 sum 19.023 5.285 -9.386 21.861 Atomic orbital electron populations 1.81301 1.12468 1.04639 1.05555 1.25530 0.92791 0.95951 0.95477 1.15633 0.84625 0.90084 0.95903 1.67710 1.13164 1.26054 1.12637 1.24130 0.86738 1.02098 0.87289 1.23147 1.05016 0.91092 0.96336 1.21941 0.89451 1.02725 0.86699 1.31696 1.09155 1.18889 1.18652 1.01485 0.73025 0.73698 0.72599 1.93603 1.60349 1.86769 1.56403 1.93565 1.60389 1.54692 1.86113 1.55371 1.47874 1.48224 1.35469 1.22012 0.87627 0.89779 1.01033 1.19148 0.94103 0.96255 0.92032 1.21472 1.13436 1.10521 1.12544 0.92522 1.25826 1.00172 0.97583 0.95445 1.70065 1.38533 1.30974 1.16995 0.85472 0.78801 0.78996 0.78261 1.19399 1.20205 1.19713 0.76082 0.77197 0.79172 0.73548 0.92667 0.91379 0.97671 0.96625 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -15.31 15.62 19.00 0.30 -15.01 16 2 C 0.22 8.00 10.02 88.33 0.88 8.89 16 3 C 0.28 7.82 6.53 40.52 0.26 8.09 16 4 N -0.48 -10.97 10.28 -189.21 -1.94 -12.91 16 5 C 0.15 1.67 11.18 84.80 0.95 2.62 16 6 C -0.14 -0.93 10.11 22.43 0.23 -0.70 16 7 C 0.02 0.25 9.66 22.44 0.22 0.46 16 8 C -0.69 -16.62 5.94 22.62 0.13 -16.48 16 9 S 2.70 82.15 5.44 -56.49 -0.31 81.84 16 10 O -0.98 -37.40 16.25 -128.00 -2.08 -39.48 16 11 O -0.96 -28.07 17.05 -128.00 -2.18 -30.25 16 12 N -1.11 -37.92 6.00 -187.48 -1.12 -39.04 16 13 C 0.12 5.25 3.92 86.38 0.34 5.59 16 14 C 0.02 1.23 5.12 29.85 0.15 1.38 16 15 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.01 0.49 5.46 84.65 0.46 0.95 16 18 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 19 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 24 H 0.21 -0.78 8.06 -2.91 -0.02 -0.80 16 25 H 0.19 1.69 7.44 -2.91 -0.02 1.66 16 26 H 0.43 13.02 8.65 -96.75 -0.84 12.18 16 27 H 0.06 2.30 6.22 -2.38 -0.01 2.28 16 28 H 0.07 3.19 5.29 -2.39 -0.01 3.18 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -80.73 287.87 -0.81 -81.54 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 0.36 Total: 1.78 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.86 Total: -20.42 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -2.49 Total: -122.47 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -4.26 Total: -69.74 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 82.15 SS G_CDS: -0.31 Total: 81.84 kcal Total: -80.73 -0.81 -81.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236408993.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.314 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds