Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39625 * 120.56706 * 219.61964 * 3 2 1 5 5 N 1.31663 * 120.56056 * 179.97438 * 4 3 2 6 6 C 1.31952 * 121.87840 * 359.72933 * 5 4 3 7 7 C 1.38306 * 121.09808 * 0.53438 * 6 5 4 8 8 S 1.76199 * 120.34409 * 179.75384 * 7 6 5 9 9 O 1.42106 * 106.40481 * 23.26464 * 8 7 6 10 10 O 1.42100 * 106.40287 * 156.18098 * 8 7 6 11 11 N 1.65599 * 107.21905 * 269.72292 * 8 7 6 12 12 C 1.46496 * 120.00141 * 64.99953 * 11 8 7 13 13 C 1.52999 * 109.47569 * 165.00083 * 12 11 8 14 14 C 1.50693 * 109.47485 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99887 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00455 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99477 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00355 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47358 * 89.99977 * 18 16 14 20 20 H 1.48502 * 109.47086 * 210.00192 * 18 16 14 21 21 H 1.48503 * 109.47180 * 329.99767 * 18 16 14 22 22 C 1.38386 * 119.31422 * 359.47982 * 7 6 5 23 23 H 1.08001 * 119.72280 * 359.95184 * 4 3 2 24 24 H 1.08006 * 119.45241 * 180.28798 * 6 5 4 25 25 H 0.97005 * 120.00149 * 245.00298 * 11 8 7 26 26 H 1.09005 * 109.46955 * 285.00201 * 12 11 8 27 27 H 1.09003 * 109.46880 * 45.00097 * 12 11 8 28 28 H 1.09005 * 109.47078 * 300.00042 * 13 12 11 29 29 H 1.09003 * 109.47008 * 60.00092 * 13 12 11 30 30 H 0.96999 * 120.00107 * 180.02562 * 17 16 14 31 31 H 1.07996 * 120.86139 * 180.23020 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2776 0.9270 0.7666 5 7 4.5942 0.9272 0.7669 6 6 5.2913 0.0606 0.0568 7 6 4.6633 -0.8854 -0.7328 8 16 5.6138 -2.0289 -1.6780 9 8 6.8825 -2.1168 -1.0440 10 8 4.7779 -3.1558 -1.9033 11 7 5.8784 -1.3392 -3.1601 12 6 6.6874 -0.1226 -3.2680 13 6 7.0891 0.0950 -4.7281 14 6 7.9207 1.3468 -4.8392 15 1 8.1411 1.9288 -3.9564 16 6 8.4012 1.7487 -6.0675 17 7 8.1332 1.0397 -7.1423 18 14 9.4326 3.3000 -6.2050 19 1 10.8673 2.9573 -6.0337 20 1 9.2265 3.9146 -7.5410 21 1 9.0239 4.2613 -5.1495 22 6 3.2805 -0.9282 -0.7684 23 1 2.7420 1.6499 1.3642 24 1 6.3704 0.0931 0.0897 25 1 5.4978 -1.7407 -3.9569 26 1 6.1069 0.7317 -2.9196 27 1 7.5835 -0.2268 -2.6562 28 1 7.6696 -0.7593 -5.0765 29 1 6.1930 0.1992 -5.3399 30 1 8.4715 1.3221 -8.0064 31 1 2.7643 -1.6588 -1.3734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289397134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -14.283511 kcal Electronic energy + Delta-G solvation = -18766.425093 eV Core-core repulsion = 15561.110753 eV Total energy + Delta-G solvation = -3205.314340 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76139 -37.30837 -37.00795 -35.88387 -35.56109 -33.31641 -32.82988 -32.24192 -29.25594 -25.30499 -24.66525 -24.53436 -21.28238 -20.55947 -19.03484 -17.62505 -17.54418 -17.28477 -16.62752 -16.34409 -15.59328 -14.97340 -14.61992 -14.17652 -13.97622 -13.91391 -13.75546 -13.55875 -13.49502 -12.94681 -12.67311 -12.14779 -12.05211 -11.92248 -11.69341 -11.38515 -11.17649 -10.77936 -10.70454 -10.55189 -10.10814 -9.88974 -9.68378 -9.35088 -9.10424 -8.47654 -6.14264 -4.18248 -0.10849 0.26627 0.43491 2.17548 2.40048 3.01886 3.20973 3.25866 3.28825 3.32893 3.35346 3.69525 3.84090 4.07085 4.22521 4.34633 4.37089 4.69187 4.88320 5.22994 5.23136 5.28844 5.57921 5.82672 6.03447 6.30740 6.58741 6.95541 7.20362 7.21666 7.47243 7.55378 7.83269 8.19919 8.87558 9.47112 10.97024 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.004392 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.138846 B = 6374.326210 C = 6941.789557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.258 3.742 3 C -0.103 4.103 4 C 0.202 3.798 5 N -0.488 5.488 6 C 0.231 3.769 7 C -0.733 4.733 8 S 2.698 3.302 9 O -0.947 6.947 10 O -0.962 6.962 11 N -1.106 6.106 12 C 0.115 3.885 13 C 0.018 3.982 14 C -0.526 4.526 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.076 3.924 23 H 0.175 0.825 24 H 0.186 0.814 25 H 0.420 0.580 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -2.755 13.391 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.059 4.059 3 C -0.110 4.110 4 C 0.042 3.958 5 N -0.196 5.196 6 C 0.073 3.927 7 C -0.818 4.818 8 S 2.782 3.218 9 O -0.937 6.937 10 O -0.952 6.952 11 N -0.869 5.869 12 C -0.010 4.010 13 C -0.021 4.021 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.047 3.953 23 H 0.192 0.808 24 H 0.202 0.798 25 H 0.255 0.745 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.972 -2.835 14.190 17.026 hybrid contribution -0.054 0.794 -0.959 1.246 sum -9.025 -2.041 13.231 16.146 Atomic orbital electron populations 1.81302 1.11586 1.07129 1.07471 1.25170 0.91986 0.94407 0.94330 1.16989 0.86004 1.02503 1.05475 1.23371 0.90044 0.92230 0.90161 1.68008 1.07316 1.23382 1.20902 1.23025 1.01505 0.84158 0.84036 1.32350 1.07743 1.21790 1.19871 1.01993 0.73763 0.72842 0.73167 1.93613 1.38942 1.85298 1.75877 1.93585 1.69287 1.47169 1.85169 1.55503 1.65978 1.42086 1.23340 1.21744 0.92881 0.82489 1.03883 1.19288 0.97204 0.97776 0.87840 1.21066 1.32800 1.08849 0.93826 0.92181 1.24997 0.96227 0.97193 0.95794 1.69952 1.45300 1.38889 0.98904 0.86531 0.80625 0.83039 0.77445 1.20487 1.21215 1.19751 1.21410 0.91863 0.92198 0.89832 0.80785 0.79756 0.74460 0.92911 0.90900 0.95406 0.95742 0.92762 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.77 18.54 41.83 0.78 -4.00 16 2 C 0.26 2.51 15.37 -22.48 -0.35 2.17 16 3 C -0.10 -0.90 5.74 -106.78 -0.61 -1.52 16 4 C 0.20 1.65 10.92 -17.11 -0.19 1.46 16 5 N -0.49 -4.96 10.35 -12.89 -0.13 -5.09 16 6 C 0.23 2.41 10.68 -17.47 -0.19 2.22 16 7 C -0.73 -7.75 5.96 -39.50 -0.24 -7.99 16 8 S 2.70 34.24 5.75 -107.50 -0.62 33.62 16 9 O -0.95 -14.40 16.76 -57.17 -0.96 -15.36 16 10 O -0.96 -13.69 17.35 -57.17 -0.99 -14.68 16 11 N -1.11 -15.38 6.00 -10.61 -0.06 -15.44 16 12 C 0.11 1.96 6.16 -4.04 -0.02 1.93 16 13 C 0.02 0.40 5.11 -27.89 -0.14 0.26 16 14 C -0.53 -13.55 9.11 -34.44 -0.31 -13.86 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 18 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 C 0.08 0.71 9.38 -38.85 -0.36 0.35 16 23 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 24 H 0.19 1.70 7.61 -52.48 -0.40 1.30 16 25 H 0.42 5.39 8.65 -34.47 -0.30 5.09 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.16 1.28 7.70 -52.49 -0.40 0.87 16 LS Contribution 303.04 15.07 4.57 4.57 Total: -1.00 -32.50 303.04 -6.95 -39.45 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -2.74 Total: -0.57 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.51 Total: -13.47 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 1.31 Total: -48.96 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.95 Total: -30.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 34.24 SS G_CDS: -0.62 Total: 33.62 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.50 -6.95 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289397134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.169 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds