Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39625 * 120.56706 * 219.61964 * 3 2 1 5 5 N 1.31663 * 120.56056 * 179.97438 * 4 3 2 6 6 C 1.31952 * 121.87840 * 359.72933 * 5 4 3 7 7 C 1.38306 * 121.09808 * 0.53438 * 6 5 4 8 8 S 1.76199 * 120.34409 * 179.75384 * 7 6 5 9 9 O 1.42106 * 106.40481 * 23.26464 * 8 7 6 10 10 O 1.42100 * 106.40287 * 156.18098 * 8 7 6 11 11 N 1.65599 * 107.21905 * 269.72292 * 8 7 6 12 12 C 1.46496 * 120.00141 * 64.99953 * 11 8 7 13 13 C 1.52999 * 109.47569 * 165.00083 * 12 11 8 14 14 C 1.50693 * 109.47485 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99887 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00455 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99477 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00355 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47358 * 89.99977 * 18 16 14 20 20 H 1.48502 * 109.47086 * 210.00192 * 18 16 14 21 21 H 1.48503 * 109.47180 * 329.99767 * 18 16 14 22 22 C 1.38386 * 119.31422 * 359.47982 * 7 6 5 23 23 H 1.08001 * 119.72280 * 359.95184 * 4 3 2 24 24 H 1.08006 * 119.45241 * 180.28798 * 6 5 4 25 25 H 0.97005 * 120.00149 * 245.00298 * 11 8 7 26 26 H 1.09005 * 109.46955 * 285.00201 * 12 11 8 27 27 H 1.09003 * 109.46880 * 45.00097 * 12 11 8 28 28 H 1.09005 * 109.47078 * 300.00042 * 13 12 11 29 29 H 1.09003 * 109.47008 * 60.00092 * 13 12 11 30 30 H 0.96999 * 120.00107 * 180.02562 * 17 16 14 31 31 H 1.07996 * 120.86139 * 180.23020 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2776 0.9270 0.7666 5 7 4.5942 0.9272 0.7669 6 6 5.2913 0.0606 0.0568 7 6 4.6633 -0.8854 -0.7328 8 16 5.6138 -2.0289 -1.6780 9 8 6.8825 -2.1168 -1.0440 10 8 4.7779 -3.1558 -1.9033 11 7 5.8784 -1.3392 -3.1601 12 6 6.6874 -0.1226 -3.2680 13 6 7.0891 0.0950 -4.7281 14 6 7.9207 1.3468 -4.8392 15 1 8.1411 1.9288 -3.9564 16 6 8.4012 1.7487 -6.0675 17 7 8.1332 1.0397 -7.1423 18 14 9.4326 3.3000 -6.2050 19 1 10.8673 2.9573 -6.0337 20 1 9.2265 3.9146 -7.5410 21 1 9.0239 4.2613 -5.1495 22 6 3.2805 -0.9282 -0.7684 23 1 2.7420 1.6499 1.3642 24 1 6.3704 0.0931 0.0897 25 1 5.4978 -1.7407 -3.9569 26 1 6.1069 0.7317 -2.9196 27 1 7.5835 -0.2268 -2.6562 28 1 7.6696 -0.7593 -5.0765 29 1 6.1930 0.1992 -5.3399 30 1 8.4715 1.3221 -8.0064 31 1 2.7643 -1.6588 -1.3734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289397134.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -38.636308 kcal Electronic energy + Delta-G solvation = -18767.481109 eV Core-core repulsion = 15561.110753 eV Total energy + Delta-G solvation = -3206.370356 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51545 -38.41687 -37.85509 -37.02256 -36.96512 -34.69066 -34.08624 -33.01568 -30.96400 -26.39038 -26.05741 -25.37226 -22.92783 -21.46123 -20.08979 -18.76557 -18.32665 -18.24377 -18.00353 -17.55182 -16.80744 -16.40883 -15.76744 -15.47283 -15.41111 -14.64551 -14.53078 -14.42150 -14.34911 -14.31886 -13.76166 -13.38490 -13.28614 -13.22478 -13.15282 -12.94989 -12.63338 -12.42395 -12.27266 -11.56247 -11.43449 -11.25772 -10.91476 -10.64930 -10.57033 -10.27848 -8.16704 -6.26390 -0.88901 -0.66502 -0.40312 1.39491 1.47282 1.48027 1.58046 1.61529 1.99900 2.42075 2.46515 2.49674 2.71162 3.08932 3.19302 3.36232 3.43490 3.58066 3.97600 4.00814 4.24689 4.50690 4.60087 4.61414 4.89825 5.03682 5.11013 5.56305 5.70410 5.86655 6.05859 6.19254 6.27125 6.47089 6.90670 7.43175 8.95181 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.004392 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.138846 B = 6374.326210 C = 6941.789557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.284 3.716 3 C -0.101 4.101 4 C 0.216 3.784 5 N -0.501 5.501 6 C 0.228 3.772 7 C -0.735 4.735 8 S 2.722 3.278 9 O -0.973 6.973 10 O -0.976 6.976 11 N -1.109 6.109 12 C 0.129 3.871 13 C 0.017 3.983 14 C -0.540 4.540 15 H 0.071 0.929 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.077 3.923 23 H 0.209 0.791 24 H 0.193 0.807 25 H 0.424 0.576 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -1.570 14.951 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.033 4.033 3 C -0.107 4.107 4 C 0.056 3.944 5 N -0.210 5.210 6 C 0.070 3.930 7 C -0.824 4.824 8 S 2.810 3.190 9 O -0.963 6.963 10 O -0.967 6.967 11 N -0.870 5.870 12 C 0.003 3.997 13 C -0.022 4.022 14 C -0.579 4.579 15 H 0.089 0.911 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.184 1.184 22 C 0.048 3.952 23 H 0.226 0.774 24 H 0.210 0.790 25 H 0.260 0.740 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.020 0.980 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.306 -1.675 15.741 18.363 hybrid contribution -0.002 0.408 -1.375 1.435 sum -9.308 -1.266 14.365 17.164 Atomic orbital electron populations 1.81341 1.12684 1.08441 1.08826 1.25108 0.91789 0.93220 0.93135 1.16926 0.85332 1.02714 1.05768 1.23931 0.89486 0.91878 0.89131 1.68107 1.08151 1.23471 1.21220 1.23241 1.02165 0.83921 0.83712 1.31850 1.07890 1.22039 1.20591 1.01016 0.73110 0.72554 0.72348 1.93578 1.40760 1.85897 1.76097 1.93566 1.69481 1.48230 1.85382 1.55366 1.65983 1.41244 1.24443 1.21387 0.93905 0.84389 0.99981 1.19175 0.95794 0.95889 0.91324 1.21604 1.32435 1.09718 0.94117 0.91087 1.25884 0.97627 1.00344 0.95678 1.70081 1.46901 1.40794 0.99408 0.85510 0.78940 0.79489 0.77498 1.20119 1.21378 1.18353 1.21619 0.91498 0.92400 0.89696 0.77412 0.79013 0.74037 0.90943 0.90575 0.97972 0.97378 0.92882 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.76 18.54 19.00 0.35 -9.41 16 2 C 0.28 4.90 15.37 88.33 1.36 6.26 16 3 C -0.10 -1.49 5.74 -21.26 -0.12 -1.61 16 4 C 0.22 2.80 10.92 85.05 0.93 3.73 16 5 N -0.50 -8.77 10.35 -194.71 -2.01 -10.79 16 6 C 0.23 4.25 10.68 84.69 0.90 5.16 16 7 C -0.74 -14.13 5.96 22.32 0.13 -14.00 16 8 S 2.72 66.21 5.75 -56.49 -0.32 65.88 16 9 O -0.97 -28.75 16.76 -128.00 -2.15 -30.89 16 10 O -0.98 -26.77 17.35 -128.00 -2.22 -28.99 16 11 N -1.11 -30.10 6.00 -187.49 -1.12 -31.22 16 12 C 0.13 4.29 6.16 86.38 0.53 4.82 16 13 C 0.02 0.78 5.11 29.85 0.15 0.93 16 14 C -0.54 -27.66 9.11 25.60 0.23 -27.42 16 15 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -53.44 13.29 21.45 0.28 -53.16 16 18 Si 0.96 41.55 29.54 68.60 2.03 43.57 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 C 0.08 1.26 9.38 22.74 0.21 1.48 16 23 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 24 H 0.19 3.18 7.61 -2.91 -0.02 3.16 16 25 H 0.42 10.83 8.65 -96.74 -0.84 10.00 16 26 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.08 2.49 7.75 -2.39 -0.02 2.47 16 28 H 0.00 0.09 8.14 -2.38 -0.02 0.08 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.18 2.38 7.70 -2.91 -0.02 2.36 16 Total: -1.00 -68.98 303.04 -0.03 -69.01 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.35 Total: 6.04 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.80 Total: -20.04 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -2.50 Total: -104.58 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -4.37 Total: -59.88 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 66.21 SS G_CDS: -0.32 Total: 65.88 kcal Total: -68.98 -0.03 -69.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289397134.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds