Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 119.62140 * 2 1 4 4 C 1.38616 * 119.16400 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.42242 * 0.25304 * 4 3 2 6 6 S 1.76203 * 120.42088 * 179.74904 * 5 4 3 7 7 O 1.42100 * 106.40416 * 203.53611 * 6 5 4 8 8 O 1.42101 * 106.40234 * 336.46310 * 6 5 4 9 9 N 1.65601 * 107.21541 * 90.00096 * 6 5 4 10 10 C 1.36942 * 120.00091 * 269.99739 * 9 6 5 11 11 H 1.08007 * 119.99626 * 7.04497 * 10 9 6 12 12 C 1.38811 * 120.00229 * 187.04349 * 10 9 6 13 13 N 1.31617 * 119.99864 * 26.45402 * 12 10 9 14 14 Si 1.86798 * 119.99760 * 206.46036 * 12 10 9 15 15 H 1.48496 * 109.47246 * 89.99988 * 14 12 10 16 16 H 1.48508 * 109.46904 * 209.99553 * 14 12 10 17 17 H 1.48497 * 109.47189 * 329.99460 * 14 12 10 18 18 C 1.46498 * 120.00308 * 89.99909 * 9 6 5 19 19 C 1.47210 * 109.47085 * 92.88219 * 18 9 6 20 20 N 8.18736 * 158.43456 * 137.25913 * 2 1 3 21 21 C 1.38178 * 119.16099 * 359.48164 * 5 4 3 22 22 N 1.31857 * 119.61899 * 179.97438 * 2 1 3 23 23 H 1.08992 * 109.47396 * 89.99917 * 1 2 3 24 24 H 1.09000 * 109.46643 * 210.00120 * 1 2 3 25 25 H 1.09006 * 109.46951 * 329.99382 * 1 2 3 26 26 H 1.08004 * 120.41527 * 0.02562 * 3 2 1 27 27 H 1.08007 * 120.78983 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 29 29 H 1.08998 * 109.47440 * 212.88362 * 18 9 6 30 30 H 1.09001 * 109.47203 * 332.89002 * 18 9 6 31 31 H 1.08008 * 119.61982 * 180.25429 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0065 6 16 5.9870 -0.1097 -0.0141 7 8 6.3321 -1.3741 -0.5632 8 8 6.4391 1.1231 -0.5572 9 7 6.4833 -0.1348 1.5656 10 6 6.7394 1.0397 2.2216 11 1 6.5100 1.9833 1.7489 12 6 7.2938 1.0174 3.4940 13 7 8.0370 -0.0016 3.8703 14 14 6.9848 2.4336 4.6723 15 1 5.7631 2.1565 5.4697 16 1 8.1478 2.5818 5.5839 17 1 6.7980 3.6882 3.9002 18 6 6.6485 -1.4134 2.2613 19 6 8.0446 -1.8634 2.1361 20 7 9.1212 -2.2102 2.0424 21 6 3.4766 -1.1947 -0.0007 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.6508 2.1374 0.0004 27 1 4.1366 2.1140 -0.0010 28 1 8.4247 -0.0170 4.7593 29 1 6.4002 -1.2884 3.3153 30 1 5.9861 -2.1567 1.8177 31 1 3.9755 -2.1527 -0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330439003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = 7.455640 kcal Electronic energy + Delta-G solvation = -19844.663122 eV Core-core repulsion = 16640.291462 eV Total energy + Delta-G solvation = -3204.371659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.05614 -36.71280 -36.46390 -35.08130 -34.38780 -33.09158 -32.26785 -31.58506 -27.86134 -27.48464 -24.12038 -23.62593 -22.34327 -18.92416 -18.13894 -17.77217 -16.89379 -16.53577 -16.01250 -15.62539 -14.72543 -14.54879 -14.42359 -14.11515 -13.69832 -13.13095 -13.04852 -12.59879 -12.48345 -12.34567 -12.19015 -11.78263 -11.54861 -11.39351 -11.34700 -11.18051 -11.02527 -10.78850 -10.54300 -10.34403 -10.15248 -9.91590 -9.73933 -9.36109 -9.12230 -8.38867 -6.52337 -4.02748 0.73887 1.15203 1.32729 3.11668 3.20675 3.22786 3.49782 3.78016 4.08360 4.22626 4.25961 4.37333 4.55717 4.66590 4.80786 4.84182 5.02020 5.24947 5.36079 5.40372 5.41536 5.51722 5.72674 5.81598 5.88678 6.05289 6.11016 6.45271 6.68119 6.85502 7.38845 7.90370 8.13479 8.66892 8.97608 9.06738 10.52697 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.007323 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.450625 B = 3822.825421 C = 4601.306373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.161 3.839 3 C -0.198 4.198 4 C 0.032 3.968 5 C -0.730 4.730 6 S 2.662 3.338 7 O -0.971 6.971 8 O -0.956 6.956 9 N -0.838 5.838 10 C -0.329 4.329 11 H 0.117 0.883 12 C 0.049 3.951 13 N -0.862 5.862 14 Si 0.910 3.090 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.269 1.269 18 C 0.240 3.760 19 C 0.259 3.741 20 N -0.476 5.476 21 C 0.195 3.805 22 N -0.502 5.502 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.274 0.726 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.160 1.379 -2.720 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.024 3.976 3 C -0.218 4.218 4 C 0.005 3.995 5 C -0.813 4.813 6 S 2.749 3.251 7 O -0.961 6.961 8 O -0.946 6.946 9 N -0.669 5.669 10 C -0.460 4.460 11 H 0.134 0.866 12 C -0.158 4.158 13 N -0.501 5.501 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.193 1.193 18 C 0.110 3.890 19 C -0.060 4.060 20 N -0.157 5.157 21 C 0.036 3.964 22 N -0.213 5.213 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.168 0.832 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.518 0.018 -3.499 12.998 hybrid contribution -0.677 1.800 1.204 2.269 sum -13.194 1.818 -2.295 13.515 Atomic orbital electron populations 1.20794 0.88759 1.03725 1.03222 1.21545 0.97054 0.88737 0.90313 1.22018 0.95180 0.99332 1.05316 1.21350 0.94393 0.97269 0.86474 1.32891 1.32023 0.99916 1.16469 1.03513 0.74495 0.73360 0.73683 1.93522 1.82688 1.42760 1.77122 1.93495 1.79356 1.44701 1.77052 1.53180 1.72235 1.10091 1.31430 1.19312 1.42593 0.84233 0.99873 0.86576 1.25020 0.94832 0.98272 0.97693 1.69927 1.27127 1.32574 1.20441 0.86198 0.78151 0.81605 0.80421 1.20217 1.21070 1.19309 1.18281 0.85000 0.83823 1.01897 1.28909 0.95250 0.90948 0.90897 1.80799 1.12007 1.11788 1.11095 1.22525 0.89138 0.97324 0.87382 1.67618 1.10021 1.29071 1.14563 0.90115 0.90194 0.90455 0.84343 0.83188 0.91466 0.85746 0.89952 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.17 36.00 0.37 -0.59 16 2 C 0.16 2.10 6.78 -82.59 -0.56 1.54 16 3 C -0.20 -2.53 9.74 -39.44 -0.38 -2.91 16 4 C 0.03 0.48 9.65 -39.28 -0.38 0.10 16 5 C -0.73 -12.31 5.99 -39.44 -0.24 -12.54 16 6 S 2.66 53.49 5.61 -107.50 -0.60 52.89 16 7 O -0.97 -20.58 16.33 -57.17 -0.93 -21.52 16 8 O -0.96 -21.52 16.24 -57.17 -0.93 -22.45 16 9 N -0.84 -18.01 2.88 -62.77 -0.18 -18.19 16 10 C -0.33 -7.64 9.37 -15.06 -0.14 -7.78 16 11 H 0.12 2.64 7.41 -52.48 -0.39 2.25 16 12 C 0.05 1.14 4.88 -17.43 -0.09 1.06 16 13 N -0.86 -21.12 9.06 55.49 0.50 -20.62 16 14 Si 0.91 18.41 29.63 -169.99 -5.04 13.38 16 15 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 C 0.24 4.82 5.09 -6.83 -0.03 4.79 16 19 C 0.26 6.08 13.34 -20.79 -0.28 5.81 16 20 N -0.48 -12.07 18.53 42.11 0.78 -11.29 16 21 C 0.19 3.09 10.69 -17.55 -0.19 2.90 16 22 N -0.50 -7.65 10.27 -9.47 -0.10 -7.75 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 27 H 0.15 2.13 7.71 -52.48 -0.40 1.73 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 29 H 0.12 2.47 6.45 -51.93 -0.34 2.13 16 30 H 0.08 1.31 7.69 -51.93 -0.40 0.91 16 31 H 0.17 2.37 7.64 -52.48 -0.40 1.97 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -31.01 293.21 -6.75 -37.76 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.75 Total: 1.00 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.92 Total: -7.63 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 1.01 Total: -57.85 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.86 Total: -43.96 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.04 Total: 13.38 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.60 Total: 52.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.01 -6.75 -37.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330439003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.212 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds