Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 119.62140 * 2 1 4 4 C 1.38616 * 119.16400 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.42242 * 0.25304 * 4 3 2 6 6 S 1.76203 * 120.42088 * 179.74904 * 5 4 3 7 7 O 1.42100 * 106.40416 * 203.53611 * 6 5 4 8 8 O 1.42101 * 106.40234 * 336.46310 * 6 5 4 9 9 N 1.65601 * 107.21541 * 90.00096 * 6 5 4 10 10 C 1.36942 * 120.00091 * 269.99739 * 9 6 5 11 11 H 1.08007 * 119.99626 * 7.04497 * 10 9 6 12 12 C 1.38811 * 120.00229 * 187.04349 * 10 9 6 13 13 N 1.31617 * 119.99864 * 26.45402 * 12 10 9 14 14 Si 1.86798 * 119.99760 * 206.46036 * 12 10 9 15 15 H 1.48496 * 109.47246 * 89.99988 * 14 12 10 16 16 H 1.48508 * 109.46904 * 209.99553 * 14 12 10 17 17 H 1.48497 * 109.47189 * 329.99460 * 14 12 10 18 18 C 1.46498 * 120.00308 * 89.99909 * 9 6 5 19 19 C 1.47210 * 109.47085 * 92.88219 * 18 9 6 20 20 N 8.18736 * 158.43456 * 137.25913 * 2 1 3 21 21 C 1.38178 * 119.16099 * 359.48164 * 5 4 3 22 22 N 1.31857 * 119.61899 * 179.97438 * 2 1 3 23 23 H 1.08992 * 109.47396 * 89.99917 * 1 2 3 24 24 H 1.09000 * 109.46643 * 210.00120 * 1 2 3 25 25 H 1.09006 * 109.46951 * 329.99382 * 1 2 3 26 26 H 1.08004 * 120.41527 * 0.02562 * 3 2 1 27 27 H 1.08007 * 120.78983 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99962 * 179.97438 * 13 12 10 29 29 H 1.08998 * 109.47440 * 212.88362 * 18 9 6 30 30 H 1.09001 * 109.47203 * 332.89002 * 18 9 6 31 31 H 1.08008 * 119.61982 * 180.25429 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0065 6 16 5.9870 -0.1097 -0.0141 7 8 6.3321 -1.3741 -0.5632 8 8 6.4391 1.1231 -0.5572 9 7 6.4833 -0.1348 1.5656 10 6 6.7394 1.0397 2.2216 11 1 6.5100 1.9833 1.7489 12 6 7.2938 1.0174 3.4940 13 7 8.0370 -0.0016 3.8703 14 14 6.9848 2.4336 4.6723 15 1 5.7631 2.1565 5.4697 16 1 8.1478 2.5818 5.5839 17 1 6.7980 3.6882 3.9002 18 6 6.6485 -1.4134 2.2613 19 6 8.0446 -1.8634 2.1361 20 7 9.1212 -2.2102 2.0424 21 6 3.4766 -1.1947 -0.0007 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.6508 2.1374 0.0004 27 1 4.1366 2.1140 -0.0010 28 1 8.4247 -0.0170 4.7593 29 1 6.4002 -1.2884 3.3153 30 1 5.9861 -2.1567 1.8177 31 1 3.9755 -2.1527 -0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330439003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -14.576363 kcal Electronic energy + Delta-G solvation = -19845.618501 eV Core-core repulsion = 16640.291462 eV Total energy + Delta-G solvation = -3205.327039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18811 -38.40552 -38.16886 -36.80871 -36.22539 -34.17907 -33.36888 -33.27580 -29.14861 -28.82990 -25.83139 -24.78507 -23.45363 -20.52904 -19.82456 -19.29530 -18.46776 -17.77525 -17.60039 -16.79349 -16.37212 -16.11909 -15.51150 -15.41316 -15.17149 -14.72229 -14.24988 -14.10525 -13.58023 -13.43339 -13.41237 -13.28826 -13.18219 -13.13578 -12.97777 -12.96735 -12.67105 -12.24971 -12.13920 -12.03429 -11.80402 -11.40931 -11.08371 -10.56950 -10.23346 -10.08652 -8.22080 -5.82262 -0.58539 -0.29302 0.19056 1.52030 1.55950 1.64310 1.93336 2.36655 2.43810 2.54295 2.70442 2.90505 3.10813 3.26656 3.38264 3.69463 3.73556 3.89579 4.09673 4.27686 4.34628 4.64590 4.71381 4.81401 4.85762 4.89683 5.05047 5.17514 5.28187 5.62328 5.65141 6.41425 6.78452 6.97860 7.15446 7.34748 8.82930 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.007323 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.450625 B = 3822.825421 C = 4601.306373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.188 4.188 4 C 0.018 3.982 5 C -0.733 4.733 6 S 2.693 3.307 7 O -0.990 6.990 8 O -0.989 6.989 9 N -0.862 5.862 10 C -0.343 4.343 11 H 0.113 0.887 12 C 0.007 3.993 13 N -0.904 5.904 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.299 1.299 17 H -0.266 1.266 18 C 0.239 3.761 19 C 0.265 3.735 20 N -0.522 5.522 21 C 0.192 3.808 22 N -0.516 5.516 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.181 0.819 27 H 0.156 0.844 28 H 0.267 0.733 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 2.226 -3.245 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.009 4.009 5 C -0.823 4.823 6 S 2.786 3.214 7 O -0.980 6.980 8 O -0.979 6.979 9 N -0.694 5.694 10 C -0.472 4.472 11 H 0.130 0.870 12 C -0.195 4.195 13 N -0.544 5.544 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.226 1.226 17 H -0.190 1.190 18 C 0.110 3.890 19 C -0.053 4.053 20 N -0.204 5.204 21 C 0.033 3.967 22 N -0.227 5.227 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.198 0.802 27 H 0.173 0.827 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.197 0.897 -3.987 16.705 hybrid contribution 0.237 1.527 1.079 1.885 sum -15.961 2.424 -2.909 16.404 Atomic orbital electron populations 1.20969 0.85376 1.05251 1.04776 1.22389 0.99260 0.88178 0.87561 1.22443 0.93920 1.01131 1.03360 1.21622 0.96054 0.96670 0.86506 1.31833 1.27786 1.01813 1.20899 1.01420 0.75069 0.72328 0.72542 1.93503 1.83474 1.43565 1.77458 1.93461 1.80563 1.46302 1.77560 1.52991 1.77104 1.10065 1.29200 1.19420 1.43452 0.84855 0.99444 0.86975 1.25638 0.94601 1.00193 0.99116 1.70025 1.29633 1.34265 1.20458 0.85277 0.77571 0.79169 0.78394 1.19074 1.22551 1.19036 1.18715 0.83624 0.84152 1.02546 1.29866 0.96128 0.89782 0.89571 1.80767 1.13524 1.13388 1.12719 1.22758 0.89778 0.97311 0.86863 1.67746 1.09295 1.30331 1.15284 0.88262 0.90033 0.87663 0.80203 0.82686 0.92241 0.85257 0.85770 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.17 71.23 0.72 -0.61 16 2 C 0.16 3.54 6.78 42.55 0.29 3.83 16 3 C -0.19 -3.96 9.74 22.36 0.22 -3.74 16 4 C 0.02 0.50 9.65 22.46 0.22 0.71 16 5 C -0.73 -23.34 5.99 22.36 0.13 -23.21 16 6 S 2.69 107.22 5.61 -56.49 -0.32 106.90 16 7 O -0.99 -41.57 16.33 -128.00 -2.09 -43.66 16 8 O -0.99 -44.67 16.24 -128.00 -2.08 -46.75 16 9 N -0.86 -37.12 2.88 -352.50 -1.02 -38.14 16 10 C -0.34 -16.10 9.37 84.03 0.79 -15.31 16 11 H 0.11 5.17 7.41 -2.91 -0.02 5.15 16 12 C 0.01 0.32 4.88 84.86 0.41 0.73 16 13 N -0.90 -45.59 9.06 21.65 0.20 -45.40 16 14 Si 0.97 38.31 29.63 68.60 2.03 40.34 16 15 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.30 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 18 C 0.24 9.62 5.09 84.58 0.43 10.06 16 19 C 0.26 12.70 13.34 89.46 1.19 13.90 16 20 N -0.52 -27.32 18.53 20.00 0.37 -26.95 16 21 C 0.19 5.61 10.69 84.67 0.90 6.52 16 22 N -0.52 -14.00 10.27 -183.88 -1.89 -15.89 16 23 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 0.78 8.08 -2.38 -0.02 0.76 16 26 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.16 4.09 7.71 -2.91 -0.02 4.07 16 28 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.13 5.17 6.45 -2.39 -0.02 5.16 16 30 H 0.12 3.81 7.69 -2.39 -0.02 3.79 16 31 H 0.18 4.68 7.64 -2.91 -0.02 4.66 16 Total: -1.00 -68.42 293.21 1.69 -66.73 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.17 Total: 9.93 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.31 Total: -7.12 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -2.34 Total: -126.37 kcal Atomic # 8 Polarization: -86.24 SS G_CDS: -4.17 Total: -90.41 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 107.22 SS G_CDS: -0.32 Total: 106.90 kcal Total: -68.42 1.69 -66.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330439003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.150 kcal (2) G-P(sol) polarization free energy of solvation -68.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds