Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86802 * 119.99472 * 2 1 4 4 H 1.48498 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47331 * 299.99786 * 3 2 1 6 6 H 1.48500 * 109.46974 * 59.99963 * 3 2 1 7 7 C 1.38788 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00161 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00136 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47164 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99780 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00159 * 180.27827 * 11 10 9 14 14 C 1.39387 * 120.00095 * 174.63713 * 13 11 10 15 15 C 1.39400 * 119.62843 * 185.06952 * 14 13 11 16 16 C 1.38312 * 119.29741 * 180.02562 * 15 14 13 17 17 C 1.38797 * 118.56476 * 0.02562 * 16 15 14 18 18 C 1.39147 * 119.21127 * 0.02562 * 17 16 15 19 19 C 1.48150 * 119.68220 * 180.02562 * 18 17 16 20 20 N 1.34772 * 120.00126 * 180.02562 * 19 18 17 21 21 O 1.21521 * 120.00367 * 359.97438 * 19 18 17 22 22 N 1.32005 * 119.63026 * 4.80250 * 14 13 11 23 23 H 0.96997 * 120.00060 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47363 * 60.00096 * 10 9 7 25 25 H 1.09007 * 109.47075 * 299.99898 * 10 9 7 26 26 H 0.96999 * 119.99753 * 354.62936 * 13 11 10 27 27 H 1.07997 * 120.35358 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.71770 * 180.02562 * 16 15 14 29 29 H 1.08005 * 120.39352 * 179.97438 * 17 16 15 30 30 H 0.96999 * 119.99945 * 359.97438 * 20 19 18 31 31 H 0.96998 * 120.00532 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0905 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9878 -5.3026 -0.0001 12 8 0.7916 -5.5022 0.0000 13 7 2.8446 -6.3430 0.0055 14 6 2.3594 -7.6449 0.1177 15 6 3.2553 -8.7070 0.2295 16 6 2.7664 -9.9961 0.3399 17 6 1.3917 -10.1872 0.3350 18 6 0.5530 -9.0829 0.2192 19 6 -0.9161 -9.2748 0.2133 20 7 -1.7343 -8.2098 0.1010 21 8 -1.3833 -10.3925 0.3089 22 7 1.0566 -7.8577 0.1223 23 1 -0.4850 0.8400 0.0004 24 1 3.1247 -3.7312 0.8905 25 1 3.1248 -3.7312 -0.8895 26 1 3.7988 -6.1857 -0.0688 27 1 4.3199 -8.5253 0.2290 28 1 3.4398 -10.8358 0.4282 29 1 0.9778 -11.1812 0.4191 30 1 -1.3615 -7.3177 0.0243 31 1 -2.6962 -8.3354 0.0975 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358534034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -25.860220 kcal Electronic energy + Delta-G solvation = -18507.987164 eV Core-core repulsion = 15302.170821 eV Total energy + Delta-G solvation = -3205.816343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99859 -39.46052 -38.35588 -34.80446 -33.82512 -32.50094 -32.41159 -30.87810 -28.81869 -25.57994 -25.15056 -23.49537 -21.20130 -20.56841 -18.58887 -17.85550 -17.17836 -16.83437 -16.38224 -16.15592 -15.59438 -15.16823 -14.87002 -14.86802 -14.37302 -14.03898 -13.68223 -13.47063 -13.33362 -12.67038 -12.36757 -12.20176 -11.12475 -11.10326 -10.84151 -10.78371 -10.67101 -10.09220 -9.98388 -9.89383 -9.63702 -9.14227 -9.11768 -8.43368 -8.34780 -6.59280 -6.29209 -4.00682 0.49453 1.08488 2.57330 2.63887 3.01605 3.17118 3.18164 3.25995 3.35935 3.48541 3.83724 4.11616 4.16477 4.59984 4.74273 4.85679 4.93815 5.06695 5.13558 5.26620 5.49769 5.69918 5.73214 5.90777 5.98789 6.04832 6.56743 6.73646 7.03106 7.40651 7.52986 7.80682 8.24463 8.27944 8.38666 9.16682 10.78241 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.003643 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.414916 B = 7683.381027 C = 8553.639040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.055 6.055 10 C -0.154 4.154 11 C 0.523 3.477 12 O -0.452 6.452 13 N -0.665 5.665 14 C 0.370 3.630 15 C -0.188 4.188 16 C -0.054 4.054 17 C -0.150 4.150 18 C 0.107 3.893 19 C 0.580 3.420 20 N -0.829 5.829 21 O -0.547 6.547 22 N -0.453 5.453 23 H 0.269 0.731 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.418 0.582 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.423 0.577 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -16.786 0.191 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.304 4.304 11 C 0.308 3.692 12 O -0.319 6.319 13 N -0.313 5.313 14 C 0.136 3.864 15 C -0.211 4.211 16 C -0.080 4.080 17 C -0.173 4.173 18 C -0.032 4.032 19 C 0.363 3.637 20 N -0.392 5.392 21 O -0.424 6.424 22 N -0.171 5.171 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.254 0.746 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.255 0.745 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.883 -16.918 0.199 17.610 hybrid contribution 2.933 1.179 -0.007 3.161 sum 7.816 -15.738 0.193 17.573 Atomic orbital electron populations 1.70017 1.05962 1.27480 1.46737 1.24989 0.95032 0.99074 0.94405 0.86106 0.79573 0.81800 0.77960 1.19592 1.20522 1.20529 1.22894 0.94967 0.91504 1.59158 0.90775 1.85390 1.04386 0.96347 1.96753 1.23567 1.07079 0.94500 1.05296 1.20616 0.86760 0.85954 0.75844 1.90732 1.14664 1.84586 1.41910 1.43876 1.11524 1.02991 1.72890 1.18444 0.88803 0.85518 0.93667 1.21709 1.00618 0.92507 1.06303 1.21359 0.95035 0.96668 0.94927 1.21989 0.93492 1.00414 1.01382 1.20963 0.94462 0.88686 0.99096 1.17833 0.85460 0.84558 0.75885 1.43772 1.10041 1.11169 1.74178 1.90803 1.76520 1.24071 1.51049 1.67522 1.13035 1.22682 1.13870 0.92150 0.88810 0.88863 0.74560 0.84060 0.83748 0.83508 0.74456 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.36 13.22 55.49 0.73 -24.63 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.67 9.50 30.94 0.29 -14.38 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.41 20.57 -107.50 -2.21 -3.62 16 10 C -0.15 -2.82 6.16 36.00 0.22 -2.60 16 11 C 0.52 8.94 7.81 -10.99 -0.09 8.86 16 12 O -0.45 -9.28 14.12 5.56 0.08 -9.20 16 13 N -0.66 -8.23 5.39 -11.42 -0.06 -8.29 16 14 C 0.37 4.75 7.42 -154.88 -1.15 3.60 16 15 C -0.19 -1.68 9.94 -39.12 -0.39 -2.07 16 16 C -0.05 -0.45 10.16 -39.35 -0.40 -0.85 16 17 C -0.15 -1.65 9.63 -39.04 -0.38 -2.03 16 18 C 0.11 1.50 6.74 -83.03 -0.56 0.94 16 19 C 0.58 8.50 8.08 -12.19 -0.10 8.40 16 20 N -0.83 -10.76 8.86 30.60 0.27 -10.49 16 21 O -0.55 -9.00 17.15 5.35 0.09 -8.91 16 22 N -0.45 -6.89 7.06 -8.93 -0.06 -6.95 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 25 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 26 H 0.42 3.40 8.70 -40.82 -0.36 3.04 16 27 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.15 1.46 7.63 -52.48 -0.40 1.06 16 30 H 0.42 6.02 8.16 -40.82 -0.33 5.69 16 31 H 0.40 4.29 8.93 -40.82 -0.36 3.92 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -35.13 300.12 -6.99 -42.11 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -2.69 Total: 7.89 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.64 Total: 1.84 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.88 Total: -50.36 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.13 -6.99 -42.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358534034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.255 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds