Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86802 * 119.99472 * 2 1 4 4 H 1.48498 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47331 * 299.99786 * 3 2 1 6 6 H 1.48500 * 109.46974 * 59.99963 * 3 2 1 7 7 C 1.38788 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00161 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00136 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47164 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99780 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00159 * 180.27827 * 11 10 9 14 14 C 1.39387 * 120.00095 * 174.63713 * 13 11 10 15 15 C 1.39400 * 119.62843 * 185.06952 * 14 13 11 16 16 C 1.38312 * 119.29741 * 180.02562 * 15 14 13 17 17 C 1.38797 * 118.56476 * 0.02562 * 16 15 14 18 18 C 1.39147 * 119.21127 * 0.02562 * 17 16 15 19 19 C 1.48150 * 119.68220 * 180.02562 * 18 17 16 20 20 N 1.34772 * 120.00126 * 180.02562 * 19 18 17 21 21 O 1.21521 * 120.00367 * 359.97438 * 19 18 17 22 22 N 1.32005 * 119.63026 * 4.80250 * 14 13 11 23 23 H 0.96997 * 120.00060 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47363 * 60.00096 * 10 9 7 25 25 H 1.09007 * 109.47075 * 299.99898 * 10 9 7 26 26 H 0.96999 * 119.99753 * 354.62936 * 13 11 10 27 27 H 1.07997 * 120.35358 * 359.97438 * 15 14 13 28 28 H 1.07998 * 120.71770 * 180.02562 * 16 15 14 29 29 H 1.08005 * 120.39352 * 179.97438 * 17 16 15 30 30 H 0.96999 * 119.99945 * 359.97438 * 20 19 18 31 31 H 0.96998 * 120.00532 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0905 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9878 -5.3026 -0.0001 12 8 0.7916 -5.5022 0.0000 13 7 2.8446 -6.3430 0.0055 14 6 2.3594 -7.6449 0.1177 15 6 3.2553 -8.7070 0.2295 16 6 2.7664 -9.9961 0.3399 17 6 1.3917 -10.1872 0.3350 18 6 0.5530 -9.0829 0.2192 19 6 -0.9161 -9.2748 0.2133 20 7 -1.7343 -8.2098 0.1010 21 8 -1.3833 -10.3925 0.3089 22 7 1.0566 -7.8577 0.1223 23 1 -0.4850 0.8400 0.0004 24 1 3.1247 -3.7312 0.8905 25 1 3.1248 -3.7312 -0.8895 26 1 3.7988 -6.1857 -0.0688 27 1 4.3199 -8.5253 0.2290 28 1 3.4398 -10.8358 0.4282 29 1 0.9778 -11.1812 0.4191 30 1 -1.3615 -7.3177 0.0243 31 1 -2.6962 -8.3354 0.0975 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358534034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -53.714853 kcal Electronic energy + Delta-G solvation = -18509.195032 eV Core-core repulsion = 15302.170821 eV Total energy + Delta-G solvation = -3207.024211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.97671 -40.63978 -39.48363 -35.94006 -34.87639 -34.57020 -33.30606 -32.02249 -30.06807 -27.65818 -26.09038 -24.45804 -22.23887 -21.72372 -19.93667 -19.40839 -18.34498 -17.90761 -17.56930 -16.96756 -16.86703 -16.76440 -16.25012 -16.06098 -15.93675 -15.21973 -14.85431 -14.77595 -14.52073 -14.07521 -13.55492 -13.15015 -13.11629 -12.91313 -12.59644 -11.86631 -11.83181 -11.70689 -11.18576 -11.14758 -10.91616 -10.74919 -10.27285 -10.18801 -9.38912 -8.63967 -8.34060 -6.10929 -0.38994 0.24361 1.23683 1.42317 1.45412 1.48756 1.57080 1.81799 1.99124 2.27878 2.41230 2.90320 3.01005 3.11271 3.37190 3.82489 3.85589 4.04006 4.13547 4.31141 4.32331 4.48143 4.53013 4.93583 5.13911 5.21186 5.44053 5.67703 5.72039 6.04090 6.21190 6.30610 6.80386 7.08353 7.16007 7.27331 8.75101 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.003643 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.414916 B = 7683.381027 C = 8553.639040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.144 6.144 10 C -0.128 4.128 11 C 0.525 3.475 12 O -0.496 6.496 13 N -0.643 5.643 14 C 0.338 3.662 15 C -0.158 4.158 16 C -0.043 4.043 17 C -0.143 4.143 18 C 0.072 3.928 19 C 0.574 3.426 20 N -0.823 5.823 21 O -0.574 6.574 22 N -0.489 5.489 23 H 0.270 0.730 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.439 0.561 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.154 0.846 30 H 0.418 0.582 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.584 -17.776 0.285 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.083 5.917 10 C -0.280 4.280 11 C 0.310 3.690 12 O -0.366 6.366 13 N -0.294 5.294 14 C 0.104 3.896 15 C -0.181 4.181 16 C -0.068 4.068 17 C -0.166 4.166 18 C -0.066 4.066 19 C 0.358 3.642 20 N -0.385 5.385 21 O -0.454 6.454 22 N -0.208 5.208 23 H 0.079 0.921 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.280 0.720 27 H 0.205 0.795 28 H 0.210 0.790 29 H 0.172 0.828 30 H 0.249 0.751 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.712 -17.945 0.292 19.950 hybrid contribution 1.838 1.309 -0.032 2.257 sum 10.550 -16.636 0.260 19.701 Atomic orbital electron populations 1.70181 1.07948 1.28493 1.48180 1.26078 0.95900 1.03231 0.93816 0.84939 0.78751 0.76546 0.77935 1.17878 1.20129 1.20161 1.23256 0.95458 0.92022 1.58586 0.89717 1.85565 1.10094 0.99024 1.97053 1.23377 1.03889 0.93375 1.07319 1.20358 0.86592 0.86395 0.75649 1.90731 1.16535 1.85135 1.44241 1.43415 1.11950 1.02076 1.71912 1.18826 0.88970 0.86175 0.95623 1.22184 1.02191 0.91205 1.02546 1.21906 0.94183 0.97937 0.92816 1.22268 0.94797 0.99780 0.99706 1.20900 0.94074 0.89457 1.02192 1.18171 0.86441 0.84284 0.75321 1.43749 1.10570 1.10665 1.73537 1.90767 1.77201 1.24778 1.52681 1.67304 1.14997 1.23654 1.14817 0.92070 0.86713 0.86634 0.71971 0.79454 0.79010 0.82807 0.75058 0.75723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.66 13.22 21.65 0.29 -54.37 16 2 C 0.01 0.80 5.49 84.85 0.47 1.27 16 3 Si 1.00 42.35 29.55 68.60 2.03 44.37 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -29.84 9.50 67.95 0.65 -29.20 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 S -0.14 -7.57 20.57 -56.49 -1.16 -8.73 16 10 C -0.13 -4.56 6.16 71.24 0.44 -4.12 16 11 C 0.52 17.60 7.81 87.66 0.68 18.29 16 12 O -0.50 -20.96 14.12 -3.01 -0.04 -21.00 16 13 N -0.64 -14.38 5.39 -308.42 -1.66 -16.04 16 14 C 0.34 7.91 7.42 133.11 0.99 8.90 16 15 C -0.16 -2.08 9.94 22.57 0.22 -1.85 16 16 C -0.04 -0.52 10.16 22.42 0.23 -0.29 16 17 C -0.14 -2.84 9.63 22.62 0.22 -2.63 16 18 C 0.07 1.99 6.74 41.85 0.28 2.27 16 19 C 0.57 17.50 8.08 86.88 0.70 18.20 16 20 N -0.82 -22.88 8.86 -175.40 -1.55 -24.43 16 21 O -0.57 -19.49 17.15 -3.78 -0.06 -19.55 16 22 N -0.49 -14.80 7.06 -182.16 -1.29 -16.09 16 23 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 25 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 26 H 0.44 5.44 8.70 -92.71 -0.81 4.63 16 27 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 28 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 29 H 0.15 2.79 7.63 -2.91 -0.02 2.77 16 30 H 0.42 12.88 8.16 -92.71 -0.76 12.12 16 31 H 0.41 9.47 8.93 -92.71 -0.83 8.64 16 Total: -1.00 -81.03 300.12 0.25 -80.78 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.17 Total: 24.22 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.88 Total: 10.84 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -4.22 Total: -110.93 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.11 Total: -40.55 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -81.03 0.25 -80.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358534034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.068 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds