Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47068 * 300.00505 * 3 2 1 6 6 H 1.48499 * 109.46920 * 60.00385 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99910 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47201 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99843 * 165.00407 * 10 9 7 12 12 O 1.42095 * 106.40185 * 311.46017 * 11 10 9 13 13 O 1.42100 * 106.40353 * 178.54069 * 11 10 9 14 14 C 1.76199 * 107.21778 * 65.00239 * 11 10 9 15 15 C 1.38961 * 119.68638 * 90.00355 * 14 11 10 16 16 C 1.36594 * 120.81893 * 180.02562 * 15 14 11 17 17 C 1.39293 * 119.84659 * 359.97438 * 16 15 14 18 18 N 1.37034 * 133.84465 * 179.97438 * 17 16 15 19 19 H 0.97001 * 125.46588 * 0.02577 * 18 17 16 20 20 N 1.39872 * 109.07457 * 179.75051 * 18 17 16 21 21 C 1.30244 * 110.08717 * 0.24714 * 20 18 17 22 22 C 1.40817 * 119.41963 * 0.15339 * 17 16 15 23 23 C 1.36473 * 119.68365 * 270.39994 * 14 11 10 24 24 H 0.97002 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46574 * 60.00620 * 9 7 2 26 26 H 1.08994 * 109.47426 * 300.01306 * 9 7 2 27 27 H 0.96995 * 120.00162 * 345.00492 * 10 9 7 28 28 H 1.08007 * 119.59516 * 359.97438 * 15 14 11 29 29 H 1.07993 * 120.08144 * 180.02562 * 16 15 14 30 30 H 1.08001 * 126.10965 * 179.97438 * 21 20 18 31 31 H 1.07993 * 120.18339 * 359.52138 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3706 12 8 0.9251 -5.0302 1.5640 13 8 2.8237 -5.9880 0.2507 14 6 0.5646 -5.6355 -0.8940 15 6 1.0429 -6.2908 -2.0222 16 6 0.1927 -6.6830 -3.0167 17 6 -1.1717 -6.4260 -2.9038 18 7 -2.2552 -6.6823 -3.7027 19 1 -2.2273 -7.1319 -4.5618 20 7 -3.4088 -6.1972 -3.0778 21 6 -3.1025 -5.6487 -1.9369 22 6 -1.6579 -5.7596 -1.7626 23 6 -0.7659 -5.3630 -0.7598 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8895 27 1 3.1349 -3.4540 -0.2179 28 1 2.1001 -6.4919 -2.1143 29 1 0.5772 -7.1919 -3.8882 30 1 -3.7940 -5.1925 -1.2440 31 1 -1.1299 -4.8545 0.1206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185946375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = 7.898165 kcal Electronic energy + Delta-G solvation = -19305.208115 eV Core-core repulsion = 16100.855645 eV Total energy + Delta-G solvation = -3204.352470 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36021 -37.30006 -36.70092 -35.31212 -34.61613 -32.61428 -32.15291 -30.08331 -29.71064 -26.74002 -23.45069 -22.70123 -22.47540 -21.82361 -19.04308 -18.11532 -17.61559 -17.09474 -16.17874 -15.91622 -15.38492 -14.96767 -14.85940 -14.49818 -14.23793 -13.70263 -13.52354 -13.12360 -12.64688 -12.20715 -12.07681 -11.80425 -11.69181 -11.52792 -11.36042 -11.06859 -10.97789 -10.73829 -10.57560 -10.50699 -10.12919 -9.42878 -8.95322 -8.85777 -8.35181 -8.23353 -6.18976 -4.23176 0.82790 0.92646 1.14130 2.35961 2.50434 3.24121 3.31939 3.35174 3.41889 3.81011 4.29458 4.33746 4.35881 4.49250 4.67235 4.88014 5.12189 5.18640 5.29277 5.41924 5.60922 5.83364 6.05399 6.15457 6.24909 6.44142 6.65317 7.06144 7.27690 7.33385 7.37139 7.79089 7.80371 8.17074 8.81249 9.41915 10.91415 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.005648 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.550437 B = 4955.965610 C = 5958.962438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.103 6.103 11 S 2.695 3.305 12 O -0.963 6.963 13 O -0.981 6.981 14 C -0.707 4.707 15 C 0.019 3.981 16 C -0.164 4.164 17 C 0.168 3.832 18 N -0.511 5.511 19 H 0.440 0.560 20 N -0.258 5.258 21 C 0.098 3.902 22 C -0.204 4.204 23 C 0.083 3.917 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.411 0.589 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.204 0.796 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -12.029 -6.206 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.122 3.878 10 N -0.866 5.866 11 S 2.783 3.217 12 O -0.953 6.953 13 O -0.971 6.971 14 C -0.794 4.794 15 C -0.003 4.003 16 C -0.187 4.187 17 C 0.050 3.950 18 N -0.225 5.225 19 H 0.284 0.716 20 N -0.071 5.071 21 C -0.100 4.100 22 C -0.213 4.213 23 C 0.062 3.938 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.245 0.755 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.221 0.779 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.647 -12.733 -6.293 14.664 hybrid contribution 0.921 1.098 -0.875 1.679 sum -2.726 -11.636 -7.168 13.936 Atomic orbital electron populations 1.69936 1.06035 1.27231 1.49594 1.24967 0.94977 0.99448 0.94807 0.86369 0.79978 0.82948 0.77685 1.19591 1.20932 1.20780 1.21235 0.93514 0.89891 1.52198 0.91536 1.19095 0.87847 0.83566 0.97315 1.55450 1.19567 1.23792 1.87747 1.01700 0.73157 0.72767 0.74055 1.93562 1.72682 1.86421 1.42657 1.93517 1.49607 1.66638 1.87319 1.30718 1.10744 1.18282 1.19630 1.20390 1.00026 0.90122 0.89782 1.19831 0.89057 1.07967 1.01865 1.19035 0.90163 0.94709 0.91141 1.46057 1.02202 1.53741 1.20452 0.71559 1.76618 1.07352 1.14200 1.08911 1.25267 0.93455 0.96899 0.94396 1.19986 0.93836 1.09527 0.97957 1.20296 0.90386 0.87689 0.95460 0.92529 0.96029 0.94270 0.75509 0.83713 0.85019 0.77943 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -13.85 9.27 -34.44 -0.32 -14.17 16 8 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 9 C 0.24 5.85 5.98 -5.20 -0.03 5.82 16 10 N -1.10 -21.49 5.99 -11.66 -0.07 -21.56 16 11 S 2.70 48.21 5.72 -107.50 -0.62 47.59 16 12 O -0.96 -19.87 16.71 -57.17 -0.96 -20.82 16 13 O -0.98 -18.21 17.25 -57.17 -0.99 -19.19 16 14 C -0.71 -11.25 5.91 -39.95 -0.24 -11.49 16 15 C 0.02 0.26 9.44 -39.91 -0.38 -0.12 16 16 C -0.16 -2.01 10.03 -39.78 -0.40 -2.41 16 17 C 0.17 2.24 7.34 -84.17 -0.62 1.62 16 18 N -0.51 -5.93 7.37 32.36 0.24 -5.69 16 19 H 0.44 3.56 8.96 -182.77 -1.64 1.92 16 20 N -0.26 -3.34 12.55 31.87 0.40 -2.94 16 21 C 0.10 1.23 12.28 -15.15 -0.19 1.04 16 22 C -0.20 -2.97 6.37 -105.21 -0.67 -3.64 16 23 C 0.08 1.31 9.52 -39.58 -0.38 0.93 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 1.01 7.75 -51.93 -0.40 0.60 16 27 H 0.41 7.28 8.54 -34.47 -0.29 6.99 16 28 H 0.15 1.72 7.58 -52.48 -0.40 1.32 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.15 2.26 7.57 -52.49 -0.40 1.86 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -33.38 291.94 -9.12 -42.50 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.93 Total: 5.24 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -3.31 Total: -20.87 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 1.30 Total: -54.31 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.94 Total: -40.01 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 48.21 SS G_CDS: -0.62 Total: 47.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.38 -9.12 -42.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185946375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.399 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds