Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47068 * 300.00505 * 3 2 1 6 6 H 1.48499 * 109.46920 * 60.00385 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99910 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47201 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99843 * 165.00407 * 10 9 7 12 12 O 1.42095 * 106.40185 * 311.46017 * 11 10 9 13 13 O 1.42100 * 106.40353 * 178.54069 * 11 10 9 14 14 C 1.76199 * 107.21778 * 65.00239 * 11 10 9 15 15 C 1.38961 * 119.68638 * 90.00355 * 14 11 10 16 16 C 1.36594 * 120.81893 * 180.02562 * 15 14 11 17 17 C 1.39293 * 119.84659 * 359.97438 * 16 15 14 18 18 N 1.37034 * 133.84465 * 179.97438 * 17 16 15 19 19 H 0.97001 * 125.46588 * 0.02577 * 18 17 16 20 20 N 1.39872 * 109.07457 * 179.75051 * 18 17 16 21 21 C 1.30244 * 110.08717 * 0.24714 * 20 18 17 22 22 C 1.40817 * 119.41963 * 0.15339 * 17 16 15 23 23 C 1.36473 * 119.68365 * 270.39994 * 14 11 10 24 24 H 0.97002 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46574 * 60.00620 * 9 7 2 26 26 H 1.08994 * 109.47426 * 300.01306 * 9 7 2 27 27 H 0.96995 * 120.00162 * 345.00492 * 10 9 7 28 28 H 1.08007 * 119.59516 * 359.97438 * 15 14 11 29 29 H 1.07993 * 120.08144 * 180.02562 * 16 15 14 30 30 H 1.08001 * 126.10965 * 179.97438 * 21 20 18 31 31 H 1.07993 * 120.18339 * 359.52138 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3706 12 8 0.9251 -5.0302 1.5640 13 8 2.8237 -5.9880 0.2507 14 6 0.5646 -5.6355 -0.8940 15 6 1.0429 -6.2908 -2.0222 16 6 0.1927 -6.6830 -3.0167 17 6 -1.1717 -6.4260 -2.9038 18 7 -2.2552 -6.6823 -3.7027 19 1 -2.2273 -7.1319 -4.5618 20 7 -3.4088 -6.1972 -3.0778 21 6 -3.1025 -5.6487 -1.9369 22 6 -1.6579 -5.7596 -1.7626 23 6 -0.7659 -5.3630 -0.7598 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8895 27 1 3.1349 -3.4540 -0.2179 28 1 2.1001 -6.4919 -2.1143 29 1 0.5772 -7.1919 -3.8882 30 1 -3.7940 -5.1925 -1.2440 31 1 -1.1299 -4.8545 0.1206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185946375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -17.931954 kcal Electronic energy + Delta-G solvation = -19306.328193 eV Core-core repulsion = 16100.855645 eV Total energy + Delta-G solvation = -3205.472548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.37592 -38.36820 -38.22969 -36.85361 -36.41907 -34.08723 -33.63866 -31.13777 -30.77637 -28.68534 -24.57687 -24.41561 -23.74849 -22.81641 -20.48967 -19.23301 -19.17157 -18.49077 -17.65885 -17.38050 -16.99378 -16.33340 -15.98616 -15.81419 -15.30644 -15.18509 -14.72019 -14.53263 -14.23633 -14.05153 -13.53323 -13.27854 -13.17061 -13.06359 -12.76652 -12.56353 -12.46867 -12.09115 -12.07035 -11.86927 -11.52935 -11.36142 -10.81770 -10.08835 -9.95746 -9.37402 -8.21889 -6.33060 -0.48464 -0.21697 -0.05240 1.36473 1.46193 1.47874 1.59682 1.60065 2.14168 2.42492 2.50115 2.87911 3.13474 3.26725 3.50871 3.65403 3.68706 4.05803 4.19191 4.38245 4.61025 4.66740 4.78742 4.98356 5.07110 5.24496 5.32698 5.36353 5.59391 5.78290 6.02640 6.18029 6.36975 6.43384 6.81705 7.36371 8.89233 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.005648 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.550437 B = 4955.965610 C = 5958.962438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.258 3.742 10 N -1.103 6.103 11 S 2.713 3.287 12 O -0.996 6.996 13 O -0.985 6.985 14 C -0.714 4.714 15 C 0.004 3.996 16 C -0.150 4.150 17 C 0.163 3.837 18 N -0.498 5.498 19 H 0.455 0.545 20 N -0.269 5.269 21 C 0.097 3.903 22 C -0.226 4.226 23 C 0.067 3.933 24 H 0.268 0.732 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.418 0.582 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.231 0.769 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -12.436 -7.772 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.134 3.866 10 N -0.865 5.865 11 S 2.805 3.195 12 O -0.986 6.986 13 O -0.975 6.975 14 C -0.805 4.805 15 C -0.018 4.018 16 C -0.173 4.173 17 C 0.044 3.956 18 N -0.213 5.213 19 H 0.303 0.697 20 N -0.081 5.081 21 C -0.101 4.101 22 C -0.235 4.235 23 C 0.044 3.956 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.254 0.746 28 H 0.182 0.818 29 H 0.190 0.810 30 H 0.247 0.753 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.109 -13.151 -7.855 15.631 hybrid contribution 0.693 1.113 -0.456 1.388 sum -2.417 -12.038 -8.311 14.826 Atomic orbital electron populations 1.70049 1.07543 1.28228 1.50513 1.25853 0.95816 1.03063 0.94395 0.85320 0.79067 0.78496 0.77625 1.18528 1.20444 1.20644 1.21667 0.94182 0.90992 1.51884 0.90769 1.18671 0.88026 0.84347 0.95602 1.55271 1.19543 1.23633 1.88014 1.00904 0.72900 0.71926 0.73781 1.93515 1.73267 1.86651 1.45210 1.93502 1.50265 1.66199 1.87568 1.30285 1.10132 1.20059 1.20013 1.20684 1.01391 0.90260 0.89430 1.20224 0.88221 1.06468 1.02354 1.19279 0.91032 0.94344 0.90994 1.46089 1.01360 1.53082 1.20802 0.69660 1.76602 1.07951 1.14462 1.09121 1.25764 0.93121 0.96558 0.94671 1.20229 0.94861 1.10152 0.98257 1.20338 0.90809 0.88419 0.95990 0.92337 0.97000 0.96758 0.74635 0.81830 0.80963 0.75281 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -28.85 9.27 25.60 0.24 -28.61 16 8 H 0.07 3.69 7.65 -2.91 -0.02 3.67 16 9 C 0.26 12.64 5.98 85.63 0.51 13.15 16 10 N -1.10 -43.50 5.99 -190.80 -1.14 -44.64 16 11 S 2.71 98.18 5.72 -56.49 -0.32 97.86 16 12 O -1.00 -42.45 16.71 -128.00 -2.14 -44.59 16 13 O -0.98 -36.05 17.25 -128.00 -2.21 -38.26 16 14 C -0.71 -22.61 5.91 22.03 0.13 -22.48 16 15 C 0.00 0.11 9.44 22.06 0.21 0.32 16 16 C -0.15 -3.25 10.03 22.14 0.22 -3.02 16 17 C 0.16 4.01 7.34 39.22 0.29 4.29 16 18 N -0.50 -10.36 7.37 -51.53 -0.38 -10.74 16 19 H 0.46 6.06 8.96 -213.47 -1.91 4.15 16 20 N -0.27 -6.47 12.55 -53.09 -0.67 -7.14 16 21 C 0.10 2.31 12.28 86.92 1.07 3.38 16 22 C -0.23 -6.40 6.37 -20.24 -0.13 -6.53 16 23 C 0.07 2.11 9.52 22.27 0.21 2.32 16 24 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.01 0.77 7.75 -2.39 -0.02 0.75 16 27 H 0.42 14.81 8.54 -96.75 -0.83 13.99 16 28 H 0.16 3.51 7.58 -2.91 -0.02 3.49 16 29 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.23 3.81 8.06 -2.91 -0.02 3.78 16 31 H 0.14 4.58 7.57 -2.91 -0.02 4.55 16 Total: -1.00 -70.70 291.94 -2.88 -73.58 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -1.54 Total: 18.38 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.21 Total: -36.25 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -1.90 Total: -114.51 kcal Atomic # 8 Polarization: -78.50 SS G_CDS: -4.35 Total: -82.85 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 98.18 SS G_CDS: -0.32 Total: 97.86 kcal Total: -70.70 -2.88 -73.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185946375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.647 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds