Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99899 * 2 1 4 4 O 1.20821 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99416 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87379 * 58.98689 * 5 3 2 7 7 C 1.54317 * 109.88239 * 297.80630 * 5 3 2 8 8 C 1.55163 * 102.94346 * 218.39205 * 7 5 3 9 9 H 1.09002 * 111.00321 * 277.39607 * 8 7 5 10 10 F 1.39896 * 111.00695 * 153.57904 * 8 7 5 11 11 C 1.54689 * 101.67503 * 35.33428 * 8 7 5 12 12 N 1.47021 * 109.87860 * 180.02562 * 5 3 2 13 13 S 1.65606 * 125.64772 * 298.31703 * 12 5 3 14 14 O 1.42098 * 106.40170 * 336.46820 * 13 12 5 15 15 O 1.42094 * 106.40170 * 203.54218 * 13 12 5 16 16 C 1.76203 * 107.21543 * 90.00347 * 13 12 5 17 17 H 1.08002 * 119.99745 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00108 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46986 * 270.00126 * 20 18 16 22 22 H 1.48496 * 109.47029 * 30.00143 * 20 18 16 23 23 H 1.48499 * 109.47352 * 149.99973 * 20 18 16 24 24 H 1.09000 * 109.46781 * 59.99718 * 1 2 3 25 25 H 1.08990 * 109.47526 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47018 * 300.00348 * 1 2 3 27 27 H 1.09000 * 110.72724 * 336.75243 * 7 5 3 28 28 H 1.09001 * 110.72431 * 99.85320 * 7 5 3 29 29 H 1.08999 * 110.39426 * 204.36394 * 11 8 7 30 30 H 1.09001 * 110.23601 * 82.11162 * 11 8 7 31 31 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9644 0.7665 -0.8777 7 6 4.1254 0.6264 1.2846 8 6 5.3111 1.5560 1.6555 9 1 6.2041 1.2959 1.0871 10 9 5.5664 1.5187 3.0304 11 6 4.7696 2.9402 1.2268 12 7 3.9934 2.6816 0.0011 13 16 3.6633 3.7908 -1.1835 14 8 3.4166 3.0492 -2.3702 15 8 4.6673 4.7917 -1.0870 16 6 2.1413 4.5703 -0.7585 17 1 1.6199 4.2818 0.1423 18 6 1.6160 5.5485 -1.5758 19 7 2.2506 5.8995 -2.6730 20 14 0.0027 6.3754 -1.1250 21 1 -1.1258 5.6182 -1.7234 22 1 -0.1453 6.3993 0.3524 23 1 -0.0031 7.7662 -1.6455 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.3744 0.6254 2.0746 28 1 4.4741 -0.3868 1.0847 29 1 5.5937 3.6222 1.0175 30 1 4.1249 3.3501 2.0043 31 1 3.0885 5.4703 -2.9069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -210.880855 kcal Electronic energy + Delta-G solvation = -21559.835866 eV Core-core repulsion = 17882.934450 eV Total energy + Delta-G solvation = -3676.901416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.69656 -40.33482 -37.81259 -36.03528 -35.56637 -34.46882 -33.10726 -30.54761 -29.63617 -27.29942 -25.42179 -23.46741 -21.64686 -20.75609 -19.29912 -18.21250 -17.74886 -16.75379 -16.57003 -16.26814 -15.67765 -15.05419 -14.70711 -14.66149 -14.41564 -14.03381 -13.73581 -13.30455 -13.07710 -13.01865 -12.66350 -12.21224 -11.95142 -11.68372 -11.13296 -11.01317 -10.98958 -10.93307 -10.72301 -10.67193 -10.58531 -10.52751 -10.25212 -10.07061 -9.07902 -8.99363 -8.23290 -7.06676 -5.20493 1.85644 2.51724 2.83247 3.28577 3.31139 3.51476 3.90098 4.15313 4.26063 4.42789 4.53305 4.71453 4.80327 5.00413 5.12656 5.26759 5.36018 5.41944 5.50409 5.53193 5.62620 5.68693 5.77018 5.89766 6.06474 6.32012 6.60277 6.97635 7.79973 8.02356 8.40134 8.73131 10.30148 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.008786 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.976450 B = 3186.094169 C = 4025.872811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.426 3.574 4 O -0.450 6.450 5 C 0.169 3.831 6 H 0.118 0.882 7 C -0.138 4.138 8 C 0.081 3.919 9 H 0.108 0.892 10 F -0.201 7.201 11 C 0.096 3.904 12 N -0.993 5.993 13 S 2.695 3.305 14 O -1.005 7.005 15 O -1.003 7.003 16 C -1.050 5.050 17 H 0.119 0.881 18 C 0.088 3.912 19 N -0.855 5.855 20 Si 1.087 2.913 21 H -0.277 1.277 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -12.411 8.694 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.264 3.736 4 O -0.332 6.332 5 C 0.060 3.940 6 H 0.136 0.864 7 C -0.177 4.177 8 C 0.043 3.957 9 H 0.125 0.875 10 F -0.181 7.181 11 C -0.030 4.030 12 N -0.826 5.826 13 S 2.800 3.200 14 O -0.996 6.996 15 O -0.993 6.993 16 C -1.186 5.186 17 H 0.137 0.863 18 C -0.129 4.129 19 N -0.486 5.486 20 Si 0.910 3.090 21 H -0.203 1.203 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.388 -10.769 7.404 13.074 hybrid contribution 0.255 -1.114 0.904 1.458 sum 0.643 -11.883 8.309 14.514 Atomic orbital electron populations 1.23219 0.76661 1.03088 1.02851 1.86434 1.23181 1.33644 1.84890 1.24366 0.92559 0.82179 0.74463 1.90976 1.66252 1.34680 1.41293 1.20603 0.87281 0.84949 1.01212 0.86397 1.23153 0.98115 0.99986 0.96487 1.22708 0.99029 0.96671 0.77312 0.87455 1.92813 1.95523 1.97290 1.32520 1.22395 0.96420 0.96326 0.87889 1.58993 1.66679 1.20200 1.36768 1.01113 0.76519 0.71637 0.70773 1.93410 1.87683 1.73276 1.45197 1.93423 1.62636 1.57204 1.86048 1.31393 1.29374 1.35176 1.22671 0.86325 1.25971 1.03744 0.92464 0.90740 1.70854 1.15750 1.39586 1.22364 0.83370 0.73098 0.76251 0.76258 1.20299 1.20401 1.20079 0.91636 0.88472 0.92086 0.88868 0.87733 0.88277 0.90317 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.36 -5.52 10.54 -39.26 -0.41 -5.94 16 3 C 0.43 7.85 7.07 36.01 0.25 8.11 16 4 O -0.45 -10.11 12.01 -18.75 -0.23 -10.34 16 5 C 0.17 2.77 3.36 -68.11 -0.23 2.54 16 6 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 7 C -0.14 -1.61 6.26 -24.90 -0.16 -1.77 16 8 C 0.08 0.98 4.85 -24.70 -0.12 0.86 16 9 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 10 F -0.20 -2.56 17.24 2.25 0.04 -2.52 16 11 C 0.10 1.56 6.90 -2.68 -0.02 1.54 16 12 N -0.99 -19.88 3.13 -105.81 -0.33 -20.21 16 13 S 2.69 71.96 4.04 -107.50 -0.43 71.52 16 14 O -1.01 -28.94 17.22 -57.17 -0.98 -29.92 16 15 O -1.00 -28.67 16.96 -57.17 -0.97 -29.64 16 16 C -1.05 -30.15 7.96 30.60 0.24 -29.91 16 17 H 0.12 3.30 6.15 -52.49 -0.32 2.98 16 18 C 0.09 2.58 5.46 -17.82 -0.10 2.48 16 19 N -0.86 -26.81 13.66 55.43 0.76 -26.06 16 20 Si 1.09 25.48 29.90 -169.99 -5.08 20.40 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.09 1.07 7.84 -51.93 -0.41 0.67 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.58 7.78 -51.93 -0.40 1.18 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.27 8.74 6.52 -40.82 -0.27 8.47 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -37.07 283.69 -5.58 -42.65 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.15 Total: 0.41 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 0.94 Total: -14.63 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.43 Total: -46.27 kcal Atomic # 8 Polarization: -73.24 SS G_CDS: -2.59 Total: -75.84 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: 71.96 SS G_CDS: -0.43 Total: 71.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -37.07 -5.58 -42.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.232 kcal (2) G-P(sol) polarization free energy of solvation -37.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds