Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99899 * 2 1 4 4 O 1.20821 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99416 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.87379 * 58.98689 * 5 3 2 7 7 C 1.54317 * 109.88239 * 297.80630 * 5 3 2 8 8 C 1.55163 * 102.94346 * 218.39205 * 7 5 3 9 9 H 1.09002 * 111.00321 * 277.39607 * 8 7 5 10 10 F 1.39896 * 111.00695 * 153.57904 * 8 7 5 11 11 C 1.54689 * 101.67503 * 35.33428 * 8 7 5 12 12 N 1.47021 * 109.87860 * 180.02562 * 5 3 2 13 13 S 1.65606 * 125.64772 * 298.31703 * 12 5 3 14 14 O 1.42098 * 106.40170 * 336.46820 * 13 12 5 15 15 O 1.42094 * 106.40170 * 203.54218 * 13 12 5 16 16 C 1.76203 * 107.21543 * 90.00347 * 13 12 5 17 17 H 1.08002 * 119.99745 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00108 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46986 * 270.00126 * 20 18 16 22 22 H 1.48496 * 109.47029 * 30.00143 * 20 18 16 23 23 H 1.48499 * 109.47352 * 149.99973 * 20 18 16 24 24 H 1.09000 * 109.46781 * 59.99718 * 1 2 3 25 25 H 1.08990 * 109.47526 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47018 * 300.00348 * 1 2 3 27 27 H 1.09000 * 110.72724 * 336.75243 * 7 5 3 28 28 H 1.09001 * 110.72431 * 99.85320 * 7 5 3 29 29 H 1.08999 * 110.39426 * 204.36394 * 11 8 7 30 30 H 1.09001 * 110.23601 * 82.11162 * 11 8 7 31 31 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9644 0.7665 -0.8777 7 6 4.1254 0.6264 1.2846 8 6 5.3111 1.5560 1.6555 9 1 6.2041 1.2959 1.0871 10 9 5.5664 1.5187 3.0304 11 6 4.7696 2.9402 1.2268 12 7 3.9934 2.6816 0.0011 13 16 3.6633 3.7908 -1.1835 14 8 3.4166 3.0492 -2.3702 15 8 4.6673 4.7917 -1.0870 16 6 2.1413 4.5703 -0.7585 17 1 1.6199 4.2818 0.1423 18 6 1.6160 5.5485 -1.5758 19 7 2.2506 5.8995 -2.6730 20 14 0.0027 6.3754 -1.1250 21 1 -1.1258 5.6182 -1.7234 22 1 -0.1453 6.3993 0.3524 23 1 -0.0031 7.7662 -1.6455 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.3744 0.6254 2.0746 28 1 4.4741 -0.3868 1.0847 29 1 5.5937 3.6222 1.0175 30 1 4.1249 3.3501 2.0043 31 1 3.0885 5.4703 -2.9069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951189.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -240.314511 kcal Electronic energy + Delta-G solvation = -21561.112205 eV Core-core repulsion = 17882.934450 eV Total energy + Delta-G solvation = -3678.177755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.68333 -41.70703 -39.09831 -37.87154 -37.32437 -36.67030 -35.33468 -31.84717 -30.87763 -28.38735 -27.66145 -24.77143 -22.73814 -22.17017 -21.39780 -19.86165 -19.07516 -18.63338 -17.80661 -17.55823 -17.08618 -16.82515 -16.47055 -16.07286 -15.78833 -15.68133 -15.14558 -14.86169 -14.38030 -14.34981 -14.14973 -13.85939 -13.15222 -13.11711 -13.05947 -12.94009 -12.82572 -12.72118 -12.65770 -12.18674 -12.01582 -11.84116 -11.77539 -11.44032 -11.19930 -10.79205 -10.12959 -9.35903 -7.50688 -0.10504 1.11610 1.38124 1.44884 1.57369 1.70848 2.24637 2.39940 2.57978 3.02307 3.16679 3.37133 3.45824 3.77828 3.85350 3.97339 4.06206 4.31618 4.33492 4.35038 4.39262 4.65458 4.67508 4.69826 4.82887 5.03331 5.25154 5.35074 5.50060 6.00950 6.51112 6.74078 7.97539 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.008786 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.976450 B = 3186.094169 C = 4025.872811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.424 3.576 4 O -0.502 6.502 5 C 0.155 3.845 6 H 0.136 0.864 7 C -0.123 4.123 8 C 0.097 3.903 9 H 0.141 0.859 10 F -0.200 7.200 11 C 0.080 3.920 12 N -0.996 5.996 13 S 2.711 3.289 14 O -1.035 7.035 15 O -1.033 7.033 16 C -1.065 5.065 17 H 0.122 0.878 18 C 0.033 3.967 19 N -0.884 5.884 20 Si 1.122 2.878 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.263 1.263 24 H 0.047 0.953 25 H 0.143 0.857 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -14.585 10.356 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.264 3.736 4 O -0.388 6.388 5 C 0.047 3.953 6 H 0.153 0.847 7 C -0.161 4.161 8 C 0.059 3.941 9 H 0.159 0.841 10 F -0.181 7.181 11 C -0.046 4.046 12 N -0.833 5.833 13 S 2.816 3.184 14 O -1.025 7.025 15 O -1.023 7.023 16 C -1.200 5.200 17 H 0.140 0.860 18 C -0.176 4.176 19 N -0.516 5.516 20 Si 0.937 3.063 21 H -0.185 1.185 22 H -0.182 1.182 23 H -0.187 1.187 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.170 0.830 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.223 -12.977 9.074 15.836 hybrid contribution 0.307 -0.586 0.478 0.816 sum 0.530 -13.562 9.552 16.597 Atomic orbital electron populations 1.23557 0.75067 1.05855 1.02109 1.86432 1.24671 1.31700 1.84001 1.24829 0.93452 0.82288 0.72987 1.90942 1.67409 1.36459 1.43999 1.21159 0.86414 0.83038 1.04737 0.84651 1.23251 0.97600 1.01562 0.93734 1.22673 1.00418 0.93552 0.77428 0.84105 1.92825 1.95524 1.97060 1.32699 1.22726 0.96012 0.99560 0.86257 1.58319 1.67080 1.21084 1.36838 1.00172 0.75483 0.71663 0.71131 1.93355 1.87887 1.73796 1.47499 1.93371 1.62900 1.59145 1.86876 1.31806 1.30573 1.35086 1.22529 0.86035 1.27665 1.06720 0.93162 0.90085 1.71003 1.15707 1.40808 1.24060 0.83026 0.69534 0.76203 0.77512 1.18547 1.18164 1.18689 0.93444 0.83903 0.91882 0.88563 0.82981 0.88672 0.90700 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.35 -9.88 10.54 -51.42 -0.54 -10.42 16 3 C 0.42 15.14 7.07 71.24 0.50 15.64 16 4 O -0.50 -22.69 12.01 21.98 0.26 -22.43 16 5 C 0.15 4.75 3.36 44.59 0.15 4.90 16 6 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 7 C -0.12 -2.35 6.26 31.78 0.20 -2.15 16 8 C 0.10 2.00 4.85 31.91 0.15 2.16 16 9 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 10 F -0.20 -4.39 17.24 44.97 0.78 -3.62 16 11 C 0.08 2.50 6.90 86.79 0.60 3.10 16 12 N -1.00 -39.37 3.13 -488.66 -1.53 -40.90 16 13 S 2.71 148.12 4.04 -56.49 -0.23 147.89 16 14 O -1.04 -61.20 17.22 -128.00 -2.20 -63.40 16 15 O -1.03 -60.90 16.96 -128.00 -2.17 -63.07 16 16 C -1.06 -62.54 7.96 67.73 0.54 -62.00 16 17 H 0.12 6.91 6.15 -2.91 -0.02 6.89 16 18 C 0.03 1.95 5.46 84.65 0.46 2.42 16 19 N -0.88 -57.10 13.66 21.45 0.29 -56.80 16 20 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 25 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 27 H 0.10 1.84 7.84 -2.39 -0.02 1.82 16 28 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 3.01 7.78 -2.39 -0.02 2.99 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.25 16.97 6.52 -92.70 -0.60 16.37 16 Total: -1.00 -84.27 283.69 1.84 -82.43 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.33 Total: 11.34 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.80 Total: -34.10 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -1.24 Total: -97.70 kcal Atomic # 8 Polarization: -154.67 SS G_CDS: -4.65 Total: -159.33 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.62 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Atomic # 16 Polarization: 148.12 SS G_CDS: -0.23 Total: 147.89 kcal Total: -84.27 1.84 -82.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951189.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.882 kcal (2) G-P(sol) polarization free energy of solvation -84.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds