Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36949 * 119.99522 * 2 1 4 4 H 1.08010 * 119.99907 * 186.02701 * 3 2 1 5 5 C 1.38970 * 120.00289 * 6.02242 * 3 2 1 6 6 N 1.31419 * 119.99921 * 6.05291 * 5 3 2 7 7 Si 1.86803 * 120.00213 * 186.05074 * 5 3 2 8 8 H 1.48497 * 109.47153 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47051 * 120.00275 * 7 5 3 10 10 H 1.48497 * 109.47388 * 239.99758 * 7 5 3 11 11 C 1.34773 * 120.00864 * 180.02562 * 2 1 3 12 12 O 1.21718 * 120.00692 * 185.61476 * 11 2 1 13 13 C 1.46695 * 119.99546 * 5.61478 * 11 2 1 14 14 C 1.39667 * 120.81000 * 75.56372 * 13 11 2 15 15 N 1.31910 * 118.94106 * 179.72838 * 14 13 11 16 16 C 1.33148 * 122.59480 * 0.25274 * 15 14 13 17 17 N 1.35376 * 122.01351 * 359.97438 * 16 15 14 18 18 C 1.36967 * 118.24665 * 0.02562 * 17 16 15 19 19 O 1.21826 * 120.08866 * 180.02562 * 18 17 16 20 20 C 1.46121 * 116.93690 * 180.02562 * 17 16 15 21 21 C 1.52665 * 112.74427 * 359.97438 * 20 17 16 22 22 S 1.77190 * 128.08328 * 180.02562 * 16 15 14 23 23 H 1.09011 * 109.46907 * 174.62064 * 1 2 3 24 24 H 1.09002 * 109.46879 * 294.61266 * 1 2 3 25 25 H 1.08999 * 109.47773 * 54.61672 * 1 2 3 26 26 H 0.97003 * 119.99741 * 179.97438 * 6 5 3 27 27 H 1.08003 * 120.52631 * 0.02562 * 14 13 11 28 28 H 1.09004 * 108.83366 * 239.14569 * 20 17 16 29 29 H 1.08994 * 108.83675 * 120.85992 * 20 17 16 30 30 H 1.08993 * 110.49089 * 241.33146 * 21 20 17 31 31 H 1.09000 * 110.60027 * 118.72855 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1861 0.0000 4 1 3.2252 1.1887 -0.0982 5 6 1.4605 2.3862 0.1263 6 7 0.1681 2.3799 0.3647 7 14 2.3711 4.0085 -0.0428 8 1 3.8080 3.7442 -0.3083 9 1 1.7945 4.7847 -1.1700 10 1 2.2344 4.7864 1.2147 11 6 2.1390 -1.1671 -0.0005 12 8 3.3518 -1.1696 0.1026 13 6 1.4109 -2.4344 -0.1254 14 6 0.8959 -2.8452 -1.3569 15 7 0.2519 -3.9943 -1.4283 16 6 0.0674 -4.7800 -0.3693 17 7 0.5318 -4.4501 0.8587 18 6 1.2096 -3.2683 0.9995 19 8 1.6425 -2.9386 2.0895 20 6 0.2671 -5.3942 1.9422 21 6 -0.5118 -6.6224 1.4777 22 16 -0.7681 -6.3410 -0.2990 23 1 -0.3633 -1.0232 -0.0964 24 1 -0.3633 0.4280 0.9343 25 1 -0.3634 0.5950 -0.8378 26 1 -0.3128 3.2177 0.4532 27 1 1.0270 -2.2341 -2.2377 28 1 -0.3062 -4.8873 2.7184 29 1 1.2173 -5.7191 2.3659 30 1 -1.4682 -6.6863 1.9965 31 1 0.0705 -7.5295 1.6395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701316796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = 7.897504 kcal Electronic energy + Delta-G solvation = -19808.226961 eV Core-core repulsion = 16603.874463 eV Total energy + Delta-G solvation = -3204.352499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.54480 -38.38453 -37.34475 -36.20700 -34.63549 -31.78406 -31.36168 -30.48101 -26.59282 -26.08262 -24.75482 -23.77828 -23.11934 -19.82057 -18.54237 -18.29607 -17.19125 -16.96333 -16.72352 -15.96702 -15.42798 -14.80998 -14.56586 -14.16127 -13.99835 -13.73263 -13.47470 -13.34355 -13.09682 -12.67000 -12.52164 -11.70608 -11.49753 -11.37980 -11.03395 -10.94374 -10.56268 -10.32090 -10.23432 -10.16338 -9.87817 -9.07875 -8.94567 -8.52323 -7.86651 -7.73513 -6.26900 -3.81169 0.36325 0.47911 1.31284 1.94266 2.15941 3.14821 3.25485 3.33369 3.54283 3.61420 3.86155 4.11753 4.16036 4.27173 4.60404 4.79063 4.97145 4.99110 5.06774 5.15313 5.54394 5.73807 5.77718 6.25133 6.36082 6.47100 7.05202 7.39356 7.55511 7.63934 7.93694 8.05071 8.47163 9.16496 9.40468 9.95862 10.67909 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.037458 B = 0.004620 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.331904 B = 6059.298711 C = 6178.498589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.431 5.431 3 C -0.295 4.295 4 H 0.108 0.892 5 C 0.026 3.974 6 N -0.884 5.884 7 Si 0.935 3.065 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.498 3.502 12 O -0.581 6.581 13 C -0.240 4.240 14 C 0.183 3.817 15 N -0.510 5.510 16 C 0.356 3.644 17 N -0.531 5.531 18 C 0.540 3.460 19 O -0.508 6.508 20 C 0.081 3.919 21 C -0.123 4.123 22 S 0.009 5.991 23 H 0.015 0.985 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.267 0.733 27 H 0.181 0.819 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -17.356 -0.144 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.148 5.148 3 C -0.423 4.423 4 H 0.125 0.875 5 C -0.176 4.176 6 N -0.525 5.525 7 Si 0.761 3.239 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.206 1.206 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.253 4.253 14 C 0.038 3.962 15 N -0.235 5.235 16 C -0.014 4.014 17 N -0.256 5.256 18 C 0.339 3.661 19 O -0.383 6.383 20 C -0.042 4.042 21 C -0.272 4.272 22 S 0.242 5.758 23 H 0.034 0.966 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.198 0.802 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.596 -17.769 -0.869 19.344 hybrid contribution 0.998 1.815 1.568 2.597 sum -6.598 -15.954 0.698 17.279 Atomic orbital electron populations 1.21753 0.80213 0.95997 1.04619 1.43636 1.06086 1.04513 1.60517 1.19912 0.93841 0.81728 1.46822 0.87451 1.25376 0.95908 0.99914 0.96429 1.70158 1.07394 1.27278 1.47666 0.85718 0.79650 0.80668 0.77855 1.19085 1.20558 1.20649 1.16679 0.86822 0.81804 0.86251 1.90648 1.13432 1.86237 1.56347 1.21905 1.08943 1.01159 0.93339 1.23100 0.86769 0.89208 0.97162 1.67852 1.23311 1.07519 1.24798 1.25810 0.93537 0.98740 0.83290 1.48196 1.47757 1.20926 1.08683 1.17453 0.79024 0.78973 0.90684 1.90922 1.49133 1.70871 1.27340 1.21734 1.03496 0.88941 0.90063 1.24418 1.06107 1.01270 0.95436 1.86559 1.66802 1.13154 1.09298 0.96612 0.90439 0.91614 0.92274 0.80170 0.87394 0.87441 0.85362 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.86 8.74 59.84 0.52 3.38 16 2 N -0.43 -11.81 3.02 -123.67 -0.37 -12.18 16 3 C -0.30 -8.52 9.54 -14.99 -0.14 -8.66 16 4 H 0.11 3.23 7.21 -52.48 -0.38 2.85 16 5 C 0.03 0.69 5.41 -17.46 -0.09 0.60 16 6 N -0.88 -23.70 9.56 55.50 0.53 -23.17 16 7 Si 0.93 21.08 29.56 -169.99 -5.02 16.06 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.50 13.48 6.62 -12.85 -0.09 13.40 16 12 O -0.58 -17.85 16.72 5.17 0.09 -17.76 16 13 C -0.24 -5.29 3.87 -104.72 -0.41 -5.70 16 14 C 0.18 3.31 10.40 -16.98 -0.18 3.13 16 15 N -0.51 -8.23 10.36 -12.22 -0.13 -8.36 16 16 C 0.36 5.04 8.32 -87.82 -0.73 4.31 16 17 N -0.53 -8.05 3.05 -118.74 -0.36 -8.41 16 18 C 0.54 11.30 7.56 -14.03 -0.11 11.19 16 19 O -0.51 -12.40 16.90 5.08 0.09 -12.31 16 20 C 0.08 0.77 6.58 -4.42 -0.03 0.75 16 21 C -0.12 -0.65 7.36 36.99 0.27 -0.37 16 22 S 0.01 0.08 23.24 -107.50 -2.50 -2.42 16 23 H 0.02 0.33 5.75 -51.92 -0.30 0.03 16 24 H 0.08 2.02 6.85 -51.93 -0.36 1.67 16 25 H 0.07 1.60 7.29 -51.93 -0.38 1.22 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.18 2.91 8.06 -52.48 -0.42 2.49 16 28 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 284.15 15.07 4.28 4.28 Total: -1.00 -36.86 284.15 -7.03 -43.89 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -2.66 Total: -1.66 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: -0.97 Total: 22.03 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.33 Total: -52.11 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: 0.17 Total: -30.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.50 Total: -2.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -36.86 -7.03 -43.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701316796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.791 kcal (2) G-P(sol) polarization free energy of solvation -36.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds