Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 120.00286 * 2 1 4 4 H 1.48501 * 109.46914 * 269.99800 * 3 2 1 5 5 H 1.48498 * 109.47037 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.46987 * 149.99698 * 3 2 1 7 7 C 1.38954 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00695 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00219 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99785 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00189 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34754 * 116.99852 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99961 * 0.27075 * 14 13 12 16 16 C 1.47406 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.39775 * 120.17010 * 359.72274 * 16 14 13 18 18 C 1.38214 * 119.84134 * 179.76189 * 17 16 14 19 19 O 1.35991 * 119.90214 * 180.22939 * 18 17 16 20 20 C 1.38987 * 120.19528 * 0.49585 * 18 17 16 21 21 C 1.38024 * 120.34415 * 359.75448 * 20 18 17 22 22 C 1.38670 * 120.15926 * 0.02562 * 21 20 18 23 23 O 1.35721 * 120.10436 * 179.97438 * 22 21 20 24 24 H 0.97004 * 119.99443 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99906 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.46831 * 60.00755 * 12 10 9 27 27 H 1.08998 * 109.47254 * 300.00389 * 12 10 9 28 28 H 1.07998 * 120.08244 * 359.97438 * 17 16 14 29 29 H 0.96700 * 114.00086 * 270.25821 * 19 18 17 30 30 H 1.07993 * 119.82277 * 179.74360 * 20 18 17 31 31 H 1.08012 * 119.91764 * 179.97438 * 21 20 18 32 32 H 0.96702 * 113.99897 * 270.02017 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 8 2.1871 -5.9666 0.0016 14 6 1.6721 -7.2118 0.0016 15 8 0.4674 -7.3710 -0.0037 16 6 2.5700 -8.3808 0.0027 17 6 3.9562 -8.2019 -0.0022 18 6 4.7918 -9.3028 0.0038 19 8 6.1407 -9.1301 0.0038 20 6 4.2576 -10.5859 0.0043 21 6 2.8899 -10.7717 0.0039 22 6 2.0381 -9.6775 0.0024 23 8 0.6935 -9.8616 0.0015 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9209 -0.8887 27 1 0.6172 -4.9205 0.8913 28 1 4.3734 -7.2057 -0.0071 29 1 6.5309 -9.0805 -0.8795 30 1 4.9161 -11.4418 0.0048 31 1 2.4822 -11.7719 0.0038 32 1 0.3045 -9.9158 -0.8822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745072205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -174.794810 kcal Electronic energy + Delta-G solvation = -20848.354923 eV Core-core repulsion = 17161.034669 eV Total energy + Delta-G solvation = -3687.320254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81258 -39.59070 -38.29015 -37.91093 -35.96670 -35.71267 -34.00299 -31.88896 -31.36604 -29.09495 -28.33887 -25.01191 -24.12753 -22.83626 -21.15527 -19.58297 -18.75347 -18.63689 -18.07258 -17.44107 -16.58322 -16.35190 -15.95710 -15.80751 -15.51397 -14.96257 -14.51581 -14.20385 -14.00896 -13.93581 -13.34887 -13.06931 -12.89721 -12.36359 -12.05353 -11.88824 -11.62345 -11.22432 -11.13531 -11.07426 -10.44370 -10.40647 -10.31678 -10.20143 -9.60906 -9.45566 -8.80270 -8.52911 -8.08659 -6.50243 -3.92295 0.36144 0.83667 2.43513 2.63621 3.13130 3.23415 3.27300 3.29670 3.73469 3.84862 3.89337 4.11019 4.45174 4.56407 4.77716 5.00915 5.09973 5.14892 5.23974 5.48110 5.59083 5.65775 5.69675 5.90555 5.99082 6.06978 6.22715 6.57718 7.31310 7.43224 7.47582 7.82975 7.95696 8.48141 9.06740 9.38958 9.88770 10.66974 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.003395 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.753895 B = 8244.799654 C = 9163.264086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.323 6.323 14 C 0.502 3.498 15 O -0.494 6.494 16 C -0.134 4.134 17 C -0.069 4.069 18 C 0.083 3.917 19 O -0.493 6.493 20 C -0.096 4.096 21 C -0.146 4.146 22 C 0.164 3.836 23 O -0.477 6.477 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.392 0.608 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -20.187 -3.358 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.237 6.237 14 C 0.346 3.654 15 O -0.383 6.383 16 C -0.135 4.135 17 C -0.087 4.087 18 C 0.038 3.962 19 O -0.303 6.303 20 C -0.115 4.115 21 C -0.164 4.164 22 C 0.118 3.882 23 O -0.288 6.288 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.174 0.826 29 H 0.248 0.752 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.487 -20.015 -2.142 20.623 hybrid contribution -0.434 0.899 -0.959 1.384 sum 4.053 -19.116 -3.101 19.786 Atomic orbital electron populations 1.69618 1.06008 1.28490 1.49631 1.25316 0.95687 0.99872 0.96871 0.85795 0.79249 0.80404 0.78487 1.20262 1.20807 1.19255 1.19730 0.93488 0.81750 1.48215 0.87599 1.41700 1.09383 1.04068 1.63787 1.19306 0.88331 0.84054 0.85994 1.90558 1.13401 1.86793 1.55291 1.22764 0.90796 0.84345 1.03605 1.86591 1.40079 1.13848 1.83228 1.20889 0.87101 0.83570 0.73811 1.90856 1.15524 1.86766 1.45156 1.19486 0.93021 0.91109 1.09925 1.21904 0.91511 1.00913 0.94395 1.18314 0.83646 0.91616 1.02620 1.84909 1.16519 1.95092 1.33750 1.21556 0.95107 0.97138 0.97688 1.21253 0.92660 0.98945 1.03551 1.18468 0.84195 0.89932 0.95633 1.84791 1.16001 1.94407 1.33591 0.91618 0.77136 0.89451 0.89418 0.82639 0.75177 0.84339 0.83957 0.74490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -14.00 5.29 -10.96 -0.06 -14.06 16 10 C 0.44 10.62 7.86 -10.98 -0.09 10.53 16 11 O -0.58 -16.01 16.08 -14.11 -0.23 -16.23 16 12 C 0.06 1.21 5.95 36.01 0.21 1.42 16 13 O -0.32 -6.16 9.00 -47.32 -0.43 -6.59 16 14 C 0.50 8.47 7.89 34.46 0.27 8.75 16 15 O -0.49 -8.89 14.94 -26.61 -0.40 -9.29 16 16 C -0.13 -1.84 5.88 -104.87 -0.62 -2.45 16 17 C -0.07 -0.87 9.55 -39.02 -0.37 -1.24 16 18 C 0.08 0.85 6.69 -39.31 -0.26 0.59 16 19 O -0.49 -4.58 13.50 -19.71 -0.27 -4.84 16 20 C -0.10 -0.80 9.97 -39.38 -0.39 -1.19 16 21 C -0.15 -1.26 9.97 -39.50 -0.39 -1.66 16 22 C 0.16 1.89 6.72 -38.71 -0.26 1.63 16 23 O -0.48 -5.48 11.57 -40.79 -0.47 -5.95 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.16 2.15 7.61 -52.49 -0.40 1.75 16 29 H 0.39 1.69 9.06 45.56 0.41 2.11 16 30 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.40 2.87 9.06 45.56 0.41 3.28 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -35.11 301.46 -4.84 -39.95 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -1.10 Total: 11.73 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.14 Total: 8.43 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.67 Total: -37.43 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.79 Total: -42.90 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.11 -4.84 -39.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745072205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.848 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds