Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 120.00286 * 2 1 4 4 H 1.48501 * 109.46914 * 269.99800 * 3 2 1 5 5 H 1.48498 * 109.47037 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.46987 * 149.99698 * 3 2 1 7 7 C 1.38954 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00695 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00219 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99785 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00189 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34754 * 116.99852 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99961 * 0.27075 * 14 13 12 16 16 C 1.47406 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.39775 * 120.17010 * 359.72274 * 16 14 13 18 18 C 1.38214 * 119.84134 * 179.76189 * 17 16 14 19 19 O 1.35991 * 119.90214 * 180.22939 * 18 17 16 20 20 C 1.38987 * 120.19528 * 0.49585 * 18 17 16 21 21 C 1.38024 * 120.34415 * 359.75448 * 20 18 17 22 22 C 1.38670 * 120.15926 * 0.02562 * 21 20 18 23 23 O 1.35721 * 120.10436 * 179.97438 * 22 21 20 24 24 H 0.97004 * 119.99443 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99906 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.46831 * 60.00755 * 12 10 9 27 27 H 1.08998 * 109.47254 * 300.00389 * 12 10 9 28 28 H 1.07998 * 120.08244 * 359.97438 * 17 16 14 29 29 H 0.96700 * 114.00086 * 270.25821 * 19 18 17 30 30 H 1.07993 * 119.82277 * 179.74360 * 20 18 17 31 31 H 1.08012 * 119.91764 * 179.97438 * 21 20 18 32 32 H 0.96702 * 113.99897 * 270.02017 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 8 2.1871 -5.9666 0.0016 14 6 1.6721 -7.2118 0.0016 15 8 0.4674 -7.3710 -0.0037 16 6 2.5700 -8.3808 0.0027 17 6 3.9562 -8.2019 -0.0022 18 6 4.7918 -9.3028 0.0038 19 8 6.1407 -9.1301 0.0038 20 6 4.2576 -10.5859 0.0043 21 6 2.8899 -10.7717 0.0039 22 6 2.0381 -9.6775 0.0024 23 8 0.6935 -9.8616 0.0015 24 1 -0.4849 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9209 -0.8887 27 1 0.6172 -4.9205 0.8913 28 1 4.3734 -7.2057 -0.0071 29 1 6.5309 -9.0805 -0.8795 30 1 4.9161 -11.4418 0.0048 31 1 2.4822 -11.7719 0.0038 32 1 0.3045 -9.9158 -0.8822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745072205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -202.498520 kcal Electronic energy + Delta-G solvation = -20849.556246 eV Core-core repulsion = 17161.034669 eV Total energy + Delta-G solvation = -3688.521577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94204 -40.74491 -39.94075 -38.93309 -37.38027 -36.52514 -36.05417 -33.45337 -32.75424 -30.13937 -29.76924 -26.77498 -25.35504 -23.69119 -22.27306 -21.46533 -20.10323 -19.73277 -19.47804 -18.62533 -17.91397 -17.76945 -17.24098 -16.94136 -16.70536 -16.43571 -15.87507 -15.71763 -15.63673 -15.04286 -14.61365 -14.16124 -13.93109 -13.84677 -13.60188 -13.56064 -12.95373 -12.78267 -12.49661 -12.16766 -12.12306 -11.98534 -11.91098 -11.59828 -11.25995 -10.54711 -10.28817 -10.14208 -9.60301 -8.54248 -6.05207 -0.55237 0.04955 1.26925 1.33242 1.35633 1.43353 1.56544 1.83995 2.28255 2.40401 2.95092 3.08612 3.11133 3.17296 3.57823 3.75664 3.96183 4.10603 4.11334 4.18233 4.23768 4.48634 4.80717 4.87371 5.07124 5.16549 5.28306 5.35158 5.51842 5.86525 6.42227 6.55977 6.70566 6.82644 7.00429 7.36773 7.90192 8.62799 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.003395 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.753895 B = 8244.799654 C = 9163.264086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.073 3.927 13 O -0.342 6.342 14 C 0.501 3.499 15 O -0.511 6.511 16 C -0.161 4.161 17 C -0.087 4.087 18 C 0.085 3.915 19 O -0.503 6.503 20 C -0.076 4.076 21 C -0.130 4.130 22 C 0.161 3.839 23 O -0.491 6.491 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.414 0.586 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -21.965 -3.560 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.004 4.004 13 O -0.257 6.257 14 C 0.347 3.653 15 O -0.401 6.401 16 C -0.163 4.163 17 C -0.105 4.105 18 C 0.040 3.960 19 O -0.317 6.317 20 C -0.094 4.094 21 C -0.148 4.148 22 C 0.115 3.885 23 O -0.305 6.305 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.149 0.851 29 H 0.273 0.727 30 H 0.194 0.806 31 H 0.195 0.805 32 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.733 -21.808 -2.373 22.442 hybrid contribution -0.484 1.338 -0.914 1.691 sum 4.249 -20.470 -3.286 21.163 Atomic orbital electron populations 1.69676 1.06982 1.29794 1.49014 1.26148 0.96595 1.02619 0.95538 0.84841 0.77878 0.76235 0.78863 1.19312 1.19377 1.19555 1.19738 0.92972 0.83355 1.50815 0.89746 1.41729 1.09563 1.04138 1.63902 1.20058 0.88073 0.85334 0.84270 1.90521 1.15419 1.87683 1.56828 1.22537 0.90128 0.82359 1.05409 1.86598 1.40533 1.14758 1.83833 1.21486 0.87573 0.83299 0.72937 1.90825 1.16209 1.86744 1.46368 1.19482 0.92956 0.90722 1.13139 1.21772 0.91630 1.00881 0.96266 1.18380 0.83796 0.91750 1.02027 1.84854 1.15936 1.95087 1.35820 1.21924 0.95452 0.97130 0.94921 1.21587 0.92353 0.99397 1.01507 1.18674 0.84605 0.89696 0.95536 1.84739 1.16259 1.94303 1.35223 0.90901 0.76532 0.87264 0.87769 0.85094 0.72682 0.80643 0.80501 0.72635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 13.05 21.66 0.28 -48.61 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -29.00 5.29 -306.98 -1.62 -30.63 16 10 C 0.44 21.85 7.86 87.66 0.69 22.54 16 11 O -0.62 -35.84 16.08 15.73 0.25 -35.59 16 12 C 0.07 2.87 5.95 71.24 0.42 3.30 16 13 O -0.34 -13.54 9.00 -50.26 -0.45 -13.99 16 14 C 0.50 17.31 7.89 70.24 0.55 17.86 16 15 O -0.51 -18.53 14.94 26.80 0.40 -18.13 16 16 C -0.16 -4.45 5.88 -20.03 -0.12 -4.57 16 17 C -0.09 -2.22 9.55 22.64 0.22 -2.01 16 18 C 0.09 1.61 6.69 22.44 0.15 1.76 16 19 O -0.50 -8.47 13.50 -93.45 -1.26 -9.73 16 20 C -0.08 -0.98 9.97 22.40 0.22 -0.75 16 21 C -0.13 -1.78 9.97 22.32 0.22 -1.56 16 22 C 0.16 3.45 6.72 22.84 0.15 3.61 16 23 O -0.49 -10.60 11.57 -69.47 -0.80 -11.40 16 24 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 25 H 0.40 19.65 7.90 -92.70 -0.73 18.92 16 26 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 28 H 0.13 3.92 7.61 -2.91 -0.02 3.90 16 29 H 0.41 2.80 9.06 -74.06 -0.67 2.12 16 30 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.18 1.25 8.06 -2.90 -0.02 1.22 16 32 H 0.41 5.43 9.06 -74.06 -0.67 4.76 16 Total: -1.00 -77.17 301.46 1.77 -75.41 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.85 Total: 26.65 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 3.80 Total: 21.73 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.34 Total: -79.23 kcal Atomic # 8 Polarization: -86.97 SS G_CDS: -1.86 Total: -88.84 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -77.17 1.77 -75.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745072205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.092 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds