Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47641 * 269.99967 * 3 2 1 5 5 H 1.48503 * 109.47239 * 30.00184 * 3 2 1 6 6 H 1.48501 * 109.47044 * 149.99800 * 3 2 1 7 7 C 1.38951 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00035 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99477 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99597 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50690 * 119.99892 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.34750 * 117.00420 * 179.97438 * 13 12 10 15 15 O 1.21509 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.47410 * 120.00324 * 180.02562 * 14 13 12 17 17 C 1.39866 * 120.17272 * 0.20357 * 16 14 13 18 18 C 1.37717 * 119.99527 * 180.25459 * 17 16 14 19 19 C 1.38559 * 120.35801 * 359.79670 * 18 17 16 20 20 C 1.38426 * 120.34347 * 359.97376 * 19 18 17 21 21 O 1.36004 * 120.00188 * 180.02562 * 20 19 18 22 22 C 1.39180 * 119.99987 * 0.02562 * 20 19 18 23 23 O 1.35722 * 120.17660 * 179.97438 * 22 20 19 24 24 H 0.97000 * 119.99896 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00685 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47234 * 59.99847 * 12 10 9 27 27 H 1.09005 * 109.47739 * 299.99948 * 12 10 9 28 28 H 1.07998 * 119.99781 * 0.02945 * 17 16 14 29 29 H 1.07999 * 119.82434 * 179.77231 * 18 17 16 30 30 H 1.07991 * 119.82975 * 179.97438 * 19 18 17 31 31 H 0.96702 * 114.00277 * 269.98017 * 21 20 19 32 32 H 0.96700 * 114.00318 * 90.00031 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 8 2.1873 -5.9665 0.0004 14 6 1.6723 -7.2117 0.0013 15 8 0.4677 -7.3710 0.0022 16 6 2.5702 -8.3807 0.0012 17 6 3.9574 -8.2017 0.0045 18 6 4.7929 -9.2964 -0.0009 19 6 4.2673 -10.5785 -0.0053 20 6 2.8967 -10.7724 -0.0038 21 8 2.3884 -12.0338 -0.0076 22 6 2.0389 -9.6764 0.0016 23 8 0.6944 -9.8624 0.0026 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6167 -4.9208 -0.8886 27 1 0.6174 -4.9205 0.8914 28 1 4.3732 -7.2050 0.0075 29 1 5.8636 -9.1550 -0.0021 30 1 4.9304 -11.4309 -0.0100 31 1 2.2396 -12.3953 -0.8921 32 1 0.3059 -9.9198 0.8863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758581358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -174.560719 kcal Electronic energy + Delta-G solvation = -20854.201457 eV Core-core repulsion = 17166.891354 eV Total energy + Delta-G solvation = -3687.310103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85892 -39.68648 -38.12337 -37.17370 -36.76199 -35.90378 -34.00815 -31.44136 -31.20234 -29.51899 -28.33664 -25.01116 -24.08056 -22.77629 -21.14357 -19.58478 -19.00089 -18.46539 -18.07058 -17.19013 -16.78532 -16.34744 -15.91310 -15.77128 -15.66818 -15.11660 -14.51334 -14.28882 -13.99794 -13.96128 -13.22343 -12.81135 -12.57690 -12.48489 -12.12683 -12.01328 -11.62936 -11.53285 -11.14020 -10.89991 -10.44954 -10.40670 -10.31795 -10.16705 -9.61399 -9.28506 -8.89144 -8.53488 -8.09241 -6.50725 -3.92834 0.37972 0.81487 2.45413 2.60794 3.12693 3.22979 3.28639 3.30870 3.72565 3.72980 4.01851 4.10649 4.47613 4.63179 4.83538 4.93653 5.08597 5.14459 5.31604 5.36267 5.55003 5.69379 5.83690 5.89313 6.02685 6.06286 6.28093 6.57949 7.16462 7.47022 7.47516 7.83273 7.95350 8.47569 9.06159 9.38453 9.88157 10.66509 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.043667 B = 0.003132 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.058716 B = 8937.863799 C = 9558.511792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.322 6.322 14 C 0.502 3.498 15 O -0.494 6.494 16 C -0.137 4.137 17 C -0.050 4.050 18 C -0.127 4.127 19 C -0.098 4.098 20 C 0.062 3.938 21 O -0.489 6.489 22 C 0.148 3.852 23 O -0.472 6.472 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.392 0.608 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -20.017 0.031 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.237 6.237 14 C 0.346 3.654 15 O -0.384 6.384 16 C -0.138 4.138 17 C -0.068 4.068 18 C -0.145 4.145 19 C -0.117 4.117 20 C 0.017 3.983 21 O -0.299 6.299 22 C 0.101 3.899 23 O -0.284 6.284 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.171 0.829 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.248 0.752 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.742 -19.786 0.048 20.346 hybrid contribution -0.595 0.778 -0.040 0.980 sum 4.147 -19.009 0.009 19.456 Atomic orbital electron populations 1.69612 1.06015 1.28507 1.49602 1.25315 0.95685 0.99879 0.96870 0.85796 0.79231 0.80409 0.78502 1.20257 1.20808 1.19264 1.19727 0.93481 0.81745 1.48234 0.87594 1.41702 1.09390 1.04076 1.63767 1.19299 0.88324 0.84042 0.85983 1.90554 1.13393 1.86802 1.55335 1.22761 0.90808 0.84339 1.03605 1.86580 1.40054 1.13800 1.83272 1.20882 0.87092 0.83577 0.73825 1.90856 1.15625 1.86768 1.45105 1.19539 0.93774 0.90526 1.10003 1.21666 0.91183 1.01093 0.92885 1.21094 1.00798 0.91289 1.01342 1.21625 0.93937 0.98428 0.97691 1.18610 0.90771 0.84019 1.04887 1.84821 1.85192 1.26042 1.33815 1.18862 0.84332 0.89816 0.96840 1.84702 1.15613 1.94311 1.33736 0.91607 0.77133 0.89442 0.89462 0.82932 0.84212 0.84382 0.75156 0.74282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.93 5.29 -10.97 -0.06 -13.99 16 10 C 0.44 10.54 7.86 -10.99 -0.09 10.45 16 11 O -0.58 -15.83 16.08 -14.12 -0.23 -16.06 16 12 C 0.06 1.20 5.95 36.00 0.21 1.41 16 13 O -0.32 -6.07 9.00 -47.31 -0.43 -6.50 16 14 C 0.50 8.46 7.89 34.46 0.27 8.74 16 15 O -0.49 -9.01 14.95 -26.60 -0.40 -9.40 16 16 C -0.14 -1.88 5.88 -104.88 -0.62 -2.49 16 17 C -0.05 -0.59 9.61 -39.16 -0.38 -0.96 16 18 C -0.13 -1.12 10.02 -39.65 -0.40 -1.52 16 19 C -0.10 -0.82 9.97 -39.39 -0.39 -1.21 16 20 C 0.06 0.63 6.71 -39.16 -0.26 0.36 16 21 O -0.49 -4.24 13.29 -34.28 -0.46 -4.70 16 22 C 0.15 1.82 6.73 -38.56 -0.26 1.56 16 23 O -0.47 -5.92 11.36 -47.47 -0.54 -6.46 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 25 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.15 1.87 7.61 -52.49 -0.40 1.47 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.39 1.76 9.06 45.56 0.41 2.18 16 32 H 0.40 3.64 9.06 45.56 0.41 4.05 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -34.45 301.18 -5.11 -39.56 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -1.10 Total: 12.28 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.15 Total: 8.44 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.67 Total: -37.30 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -2.05 Total: -43.12 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.45 -5.11 -39.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758581358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.005 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds