Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48496 * 109.47641 * 269.99967 * 3 2 1 5 5 H 1.48503 * 109.47239 * 30.00184 * 3 2 1 6 6 H 1.48501 * 109.47044 * 149.99800 * 3 2 1 7 7 C 1.38951 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00035 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99477 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99597 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50690 * 119.99892 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.34750 * 117.00420 * 179.97438 * 13 12 10 15 15 O 1.21509 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.47410 * 120.00324 * 180.02562 * 14 13 12 17 17 C 1.39866 * 120.17272 * 0.20357 * 16 14 13 18 18 C 1.37717 * 119.99527 * 180.25459 * 17 16 14 19 19 C 1.38559 * 120.35801 * 359.79670 * 18 17 16 20 20 C 1.38426 * 120.34347 * 359.97376 * 19 18 17 21 21 O 1.36004 * 120.00188 * 180.02562 * 20 19 18 22 22 C 1.39180 * 119.99987 * 0.02562 * 20 19 18 23 23 O 1.35722 * 120.17660 * 179.97438 * 22 20 19 24 24 H 0.97000 * 119.99896 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00685 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47234 * 59.99847 * 12 10 9 27 27 H 1.09005 * 109.47739 * 299.99948 * 12 10 9 28 28 H 1.07998 * 119.99781 * 0.02945 * 17 16 14 29 29 H 1.07999 * 119.82434 * 179.77231 * 18 17 16 30 30 H 1.07991 * 119.82975 * 179.97438 * 19 18 17 31 31 H 0.96702 * 114.00277 * 269.98017 * 21 20 19 32 32 H 0.96700 * 114.00318 * 90.00031 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 8 2.1873 -5.9665 0.0004 14 6 1.6723 -7.2117 0.0013 15 8 0.4677 -7.3710 0.0022 16 6 2.5702 -8.3807 0.0012 17 6 3.9574 -8.2017 0.0045 18 6 4.7929 -9.2964 -0.0009 19 6 4.2673 -10.5785 -0.0053 20 6 2.8967 -10.7724 -0.0038 21 8 2.3884 -12.0338 -0.0076 22 6 2.0389 -9.6764 0.0016 23 8 0.6944 -9.8624 0.0026 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6167 -4.9208 -0.8886 27 1 0.6174 -4.9205 0.8914 28 1 4.3732 -7.2050 0.0075 29 1 5.8636 -9.1550 -0.0021 30 1 4.9304 -11.4309 -0.0100 31 1 2.2396 -12.3953 -0.8921 32 1 0.3059 -9.9198 0.8863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758581358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = -200.939102 kcal Electronic energy + Delta-G solvation = -20855.345309 eV Core-core repulsion = 17166.891354 eV Total energy + Delta-G solvation = -3688.453956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96095 -40.84470 -39.94457 -38.09949 -37.55161 -37.28158 -36.04202 -33.43748 -32.17822 -30.33635 -29.93991 -26.76539 -25.32084 -23.59761 -22.28082 -21.45296 -20.09077 -19.96154 -19.32788 -18.34062 -18.10324 -17.75501 -17.26915 -16.92314 -16.66438 -16.53184 -15.97190 -15.74715 -15.66679 -15.03636 -14.72317 -14.06025 -13.90825 -13.57091 -13.50032 -13.33771 -13.08083 -12.93949 -12.48527 -12.32231 -12.12268 -12.00344 -11.90467 -11.58689 -11.18552 -10.53173 -10.13522 -10.12302 -9.68332 -8.53325 -6.04201 -0.54099 0.03602 1.25736 1.34134 1.36417 1.43898 1.57008 1.85114 2.28644 2.43278 2.91541 3.01091 3.12171 3.28651 3.54241 3.91516 3.95507 4.06193 4.12020 4.19039 4.25660 4.52680 4.66434 5.03613 5.10570 5.19029 5.29536 5.36151 5.57050 5.87508 6.43034 6.53060 6.58097 6.79066 7.01352 7.37973 7.91007 8.63778 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.043667 B = 0.003132 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.058716 B = 8937.863799 C = 9558.511792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.072 3.928 13 O -0.338 6.338 14 C 0.502 3.498 15 O -0.515 6.515 16 C -0.163 4.163 17 C -0.061 4.061 18 C -0.115 4.115 19 C -0.080 4.080 20 C 0.067 3.933 21 O -0.494 6.494 22 C 0.135 3.865 23 O -0.488 6.488 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.412 0.588 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -21.322 -0.014 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.253 6.253 14 C 0.348 3.652 15 O -0.406 6.406 16 C -0.165 4.165 17 C -0.080 4.080 18 C -0.132 4.132 19 C -0.098 4.098 20 C 0.022 3.978 21 O -0.306 6.306 22 C 0.089 3.911 23 O -0.301 6.301 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.157 0.843 29 H 0.190 0.810 30 H 0.192 0.808 31 H 0.271 0.729 32 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.667 -21.118 -0.006 21.865 hybrid contribution -0.880 1.035 -0.028 1.359 sum 4.787 -20.083 -0.034 20.645 Atomic orbital electron populations 1.69673 1.07016 1.29774 1.49115 1.26148 0.96581 1.02648 0.95593 0.84841 0.77924 0.76247 0.78813 1.19440 1.19442 1.19409 1.19742 0.92996 0.83311 1.50704 0.89625 1.41737 1.09563 1.04174 1.63969 1.20019 0.88078 0.85249 0.84227 1.90517 1.15292 1.87658 1.56750 1.22532 0.90185 0.82435 1.05325 1.86582 1.40356 1.14555 1.83822 1.21481 0.87509 0.83378 0.72877 1.90827 1.16516 1.86788 1.46437 1.19527 0.94167 0.89703 1.13137 1.21669 0.90734 1.01714 0.93847 1.21424 1.01971 0.90471 0.99375 1.22007 0.93514 0.99301 0.95005 1.18662 0.91163 0.83855 1.04115 1.84781 1.85168 1.25070 1.35625 1.19069 0.84478 0.89990 0.97590 1.84659 1.16220 1.94320 1.34889 0.90938 0.76584 0.87768 0.87515 0.84262 0.81027 0.80784 0.72890 0.73130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.34 -19.04 9.68 84.04 0.81 -18.22 16 8 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.79 5.29 -306.98 -1.62 -30.42 16 10 C 0.44 21.60 7.86 87.65 0.69 22.29 16 11 O -0.62 -34.94 16.08 15.72 0.25 -34.69 16 12 C 0.07 2.82 5.95 71.23 0.42 3.25 16 13 O -0.34 -13.05 9.00 -50.22 -0.45 -13.50 16 14 C 0.50 17.27 7.89 70.24 0.55 17.82 16 15 O -0.52 -19.08 14.95 26.82 0.40 -18.68 16 16 C -0.16 -4.50 5.88 -20.03 -0.12 -4.61 16 17 C -0.06 -1.40 9.61 22.54 0.22 -1.18 16 18 C -0.11 -1.69 10.02 22.22 0.22 -1.47 16 19 C -0.08 -1.03 9.97 22.39 0.22 -0.81 16 20 C 0.07 1.19 6.71 22.54 0.15 1.34 16 21 O -0.49 -7.17 13.29 -79.71 -1.06 -8.23 16 22 C 0.14 3.23 6.73 22.93 0.15 3.38 16 23 O -0.49 -12.13 11.36 -63.10 -0.72 -12.84 16 24 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 25 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 26 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 27 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 28 H 0.14 3.50 7.61 -2.91 -0.02 3.47 16 29 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.17 1.06 8.06 -2.92 -0.02 1.04 16 31 H 0.41 2.49 9.06 -74.06 -0.67 1.82 16 32 H 0.41 7.52 9.06 -74.06 -0.67 6.84 16 Total: -1.00 -75.04 301.18 2.06 -72.98 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.85 Total: 28.16 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 3.80 Total: 21.78 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.34 Total: -78.96 kcal Atomic # 8 Polarization: -86.37 SS G_CDS: -1.57 Total: -87.95 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -75.04 2.06 -72.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758581358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.960 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds