Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.32217 * 119.81507 * 2 1 4 4 O 1.21255 * 122.89683 * 0.03004 * 3 2 1 5 5 C 1.51117 * 114.20451 * 180.31307 * 3 2 1 6 6 S 1.82385 * 103.49036 * 359.71912 * 5 3 2 7 7 C 1.36734 * 119.81647 * 179.75737 * 2 1 3 8 8 C 1.36556 * 126.26687 * 359.97438 * 7 2 1 9 9 C 1.40300 * 120.00263 * 179.71145 * 8 7 2 10 10 O 1.21942 * 119.99873 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00219 * 179.72289 * 9 8 7 12 12 C 1.36970 * 120.00019 * 180.27834 * 11 9 8 13 13 H 1.08004 * 120.00230 * 17.92239 * 12 11 9 14 14 C 1.38915 * 120.00122 * 197.92797 * 12 11 9 15 15 N 1.31468 * 119.99778 * 21.42778 * 14 12 11 16 16 Si 1.86800 * 120.00304 * 201.42619 * 14 12 11 17 17 H 1.48499 * 109.46958 * 59.99632 * 16 14 12 18 18 H 1.48495 * 109.47582 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46921 * 299.99992 * 16 14 12 20 20 C 1.46494 * 119.99993 * 0.27846 * 11 9 8 21 21 C 1.47207 * 109.47094 * 84.07023 * 20 11 9 22 22 N 5.72783 * 70.06904 * 206.64460 * 2 1 3 23 23 H 1.08997 * 109.46931 * 270.23713 * 1 2 3 24 24 H 1.08994 * 109.47292 * 30.24267 * 1 2 3 25 25 H 1.09004 * 109.46511 * 150.24077 * 1 2 3 26 26 H 1.08997 * 110.61938 * 241.21763 * 5 3 2 27 27 H 1.09005 * 110.61328 * 118.21498 * 5 3 2 28 28 H 1.08005 * 120.00213 * 359.71129 * 8 7 2 29 29 H 0.97006 * 119.99693 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.47131 * 204.06964 * 20 11 9 31 31 H 1.09001 * 109.47120 * 324.06968 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1472 0.0000 4 8 1.5665 2.2248 0.0005 5 6 3.6263 0.9994 -0.0075 6 16 3.8764 -0.8072 -0.0049 7 6 2.1449 -1.1863 0.0050 8 6 1.5913 -2.4346 0.0108 9 6 2.4175 -3.5685 0.0094 10 8 3.6301 -3.4393 0.0035 11 7 1.8712 -4.8005 0.0208 12 6 2.6779 -5.9074 0.0252 13 1 3.7164 -5.8177 0.3077 14 6 2.1603 -7.1456 -0.3339 15 7 1.0683 -7.2152 -1.0627 16 14 3.0159 -8.7115 0.2187 17 1 3.0565 -8.7562 1.7024 18 1 2.2697 -9.8897 -0.2913 19 1 4.4015 -8.7333 -0.3153 20 6 0.4145 -4.9557 0.0284 21 6 -0.0948 -4.8752 -1.3504 22 7 -0.4875 -4.8129 -2.4148 23 1 -0.3633 0.0043 1.0276 24 1 -0.3633 0.8877 -0.5176 25 1 -0.3632 -0.8922 -0.5101 26 1 4.0606 1.4483 0.8858 27 1 4.0511 1.4444 -0.9074 28 1 0.5173 -2.5491 0.0164 29 1 0.7067 -8.0798 -1.3131 30 1 0.1545 -5.9242 0.4557 31 1 -0.0323 -4.1624 0.6277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874261439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = 16.690969 kcal Electronic energy + Delta-G solvation = -19466.328466 eV Core-core repulsion = 16262.357281 eV Total energy + Delta-G solvation = -3203.971185 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90309 -39.11030 -36.84894 -35.84688 -34.43879 -32.12019 -31.26243 -30.71117 -27.59102 -26.96629 -25.41507 -23.21361 -20.13869 -19.29897 -18.06173 -17.91149 -16.70710 -16.63653 -16.40865 -16.02757 -14.99786 -14.83315 -14.12930 -14.08914 -13.97595 -13.62932 -13.21416 -13.07542 -12.75495 -12.46426 -12.15595 -11.82030 -11.69127 -11.46676 -11.29482 -11.20773 -10.93990 -10.65296 -10.50044 -10.41992 -10.16613 -9.36263 -8.67793 -8.56832 -8.17047 -7.38447 -6.64414 -4.03989 1.10628 1.48024 2.01458 2.43815 2.72018 3.10839 3.16688 3.19302 3.58774 3.87415 3.98844 4.07027 4.15250 4.78738 4.86967 4.93347 5.01675 5.14203 5.22009 5.28217 5.35679 5.52550 5.71637 5.97081 6.05741 6.27753 6.40982 6.91287 7.34734 7.54240 7.82783 8.18372 8.66106 8.89946 9.06983 9.65387 10.40597 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.005253 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.395260 B = 5329.130848 C = 6126.566372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.542 5.542 3 C 0.523 3.477 4 O -0.509 6.509 5 C -0.200 4.200 6 S 0.030 5.970 7 C 0.130 3.870 8 C -0.206 4.206 9 C 0.482 3.518 10 O -0.569 6.569 11 N -0.426 5.426 12 C -0.300 4.300 13 H 0.113 0.887 14 C 0.030 3.970 15 N -0.868 5.868 16 Si 0.931 3.069 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.219 3.781 21 C 0.244 3.756 22 N -0.469 5.469 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.277 0.723 30 H 0.129 0.871 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 9.116 5.640 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.264 5.264 3 C 0.311 3.689 4 O -0.384 6.384 5 C -0.350 4.350 6 S 0.269 5.731 7 C -0.082 4.082 8 C -0.243 4.243 9 C 0.276 3.724 10 O -0.457 6.457 11 N -0.144 5.144 12 C -0.428 4.428 13 H 0.131 0.869 14 C -0.175 4.175 15 N -0.506 5.506 16 Si 0.757 3.243 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.196 1.196 20 C 0.091 3.909 21 C -0.075 4.075 22 N -0.149 5.149 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.720 9.138 3.978 9.992 hybrid contribution -0.962 -0.387 0.403 1.112 sum -1.682 8.751 4.381 9.930 Atomic orbital electron populations 1.22055 0.77331 1.04737 1.03605 1.44501 1.09213 1.04976 1.67738 1.19806 0.89539 0.83405 0.76163 1.90761 1.72510 1.26186 1.48964 1.24685 0.95926 1.04836 1.09545 1.88004 0.99626 0.94589 1.90837 1.22120 0.94858 0.87789 1.03457 1.21020 1.00375 0.90036 1.12882 1.15949 0.88141 0.82973 0.85322 1.90646 1.14194 1.84356 1.56468 1.43540 1.03491 1.05371 1.62011 1.19787 0.96176 0.83748 1.43083 0.86897 1.25371 0.97050 1.00054 0.94989 1.69885 1.22619 1.26982 1.31140 0.85896 0.79398 0.79673 0.79315 1.19516 1.20927 1.19611 1.18812 0.82209 1.04457 0.85388 1.29288 0.92343 0.90385 0.95481 1.80918 1.10245 1.12053 1.11638 0.90860 0.89503 0.89490 0.84578 0.84622 0.84858 0.91278 0.85378 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.06 59.85 0.60 1.35 16 2 N -0.54 -7.67 2.95 -122.24 -0.36 -8.03 16 3 C 0.52 7.42 7.79 -11.91 -0.09 7.32 16 4 O -0.51 -8.19 16.94 5.58 0.09 -8.10 16 5 C -0.20 -2.36 7.36 36.21 0.27 -2.10 16 6 S 0.03 0.48 20.64 -107.50 -2.22 -1.74 16 7 C 0.13 2.13 7.00 -15.97 -0.11 2.02 16 8 C -0.21 -3.60 8.28 -39.41 -0.33 -3.93 16 9 C 0.48 10.52 7.30 -15.48 -0.11 10.41 16 10 O -0.57 -13.98 13.76 4.97 0.07 -13.91 16 11 N -0.43 -9.45 2.60 -121.58 -0.32 -9.76 16 12 C -0.30 -7.33 9.31 -15.01 -0.14 -7.47 16 13 H 0.11 2.90 7.39 -52.48 -0.39 2.52 16 14 C 0.03 0.71 4.86 -17.46 -0.08 0.62 16 15 N -0.87 -20.85 9.49 55.49 0.53 -20.32 16 16 Si 0.93 18.68 29.60 -169.99 -5.03 13.64 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C 0.22 4.06 4.78 -6.83 -0.03 4.03 16 21 C 0.24 5.10 13.26 -20.75 -0.28 4.83 16 22 N -0.47 -10.71 18.54 42.16 0.78 -9.93 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.95 7.50 -51.93 -0.39 0.56 16 25 H 0.09 0.91 6.61 -51.93 -0.34 0.57 16 26 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.13 1.95 4.69 -52.48 -0.25 1.70 16 29 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 30 H 0.13 2.41 6.46 -51.93 -0.34 2.08 16 31 H 0.09 1.19 6.42 -51.93 -0.33 0.86 16 LS Contribution 287.66 15.07 4.34 4.34 Total: -1.00 -30.74 287.66 -4.87 -35.61 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -2.44 Total: 1.13 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: -0.31 Total: 17.08 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.63 Total: -48.05 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.16 Total: -22.01 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -2.22 Total: -1.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.74 -4.87 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.302 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds