Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.32217 * 119.81507 * 2 1 4 4 O 1.21255 * 122.89683 * 0.03004 * 3 2 1 5 5 C 1.51117 * 114.20451 * 180.31307 * 3 2 1 6 6 S 1.82385 * 103.49036 * 359.71912 * 5 3 2 7 7 C 1.36734 * 119.81647 * 179.75737 * 2 1 3 8 8 C 1.36556 * 126.26687 * 359.97438 * 7 2 1 9 9 C 1.40300 * 120.00263 * 179.71145 * 8 7 2 10 10 O 1.21942 * 119.99873 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00219 * 179.72289 * 9 8 7 12 12 C 1.36970 * 120.00019 * 180.27834 * 11 9 8 13 13 H 1.08004 * 120.00230 * 17.92239 * 12 11 9 14 14 C 1.38915 * 120.00122 * 197.92797 * 12 11 9 15 15 N 1.31468 * 119.99778 * 21.42778 * 14 12 11 16 16 Si 1.86800 * 120.00304 * 201.42619 * 14 12 11 17 17 H 1.48499 * 109.46958 * 59.99632 * 16 14 12 18 18 H 1.48495 * 109.47582 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46921 * 299.99992 * 16 14 12 20 20 C 1.46494 * 119.99993 * 0.27846 * 11 9 8 21 21 C 1.47207 * 109.47094 * 84.07023 * 20 11 9 22 22 N 5.72783 * 70.06904 * 206.64460 * 2 1 3 23 23 H 1.08997 * 109.46931 * 270.23713 * 1 2 3 24 24 H 1.08994 * 109.47292 * 30.24267 * 1 2 3 25 25 H 1.09004 * 109.46511 * 150.24077 * 1 2 3 26 26 H 1.08997 * 110.61938 * 241.21763 * 5 3 2 27 27 H 1.09005 * 110.61328 * 118.21498 * 5 3 2 28 28 H 1.08005 * 120.00213 * 359.71129 * 8 7 2 29 29 H 0.97006 * 119.99693 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.47131 * 204.06964 * 20 11 9 31 31 H 1.09001 * 109.47120 * 324.06968 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1472 0.0000 4 8 1.5665 2.2248 0.0005 5 6 3.6263 0.9994 -0.0075 6 16 3.8764 -0.8072 -0.0049 7 6 2.1449 -1.1863 0.0050 8 6 1.5913 -2.4346 0.0108 9 6 2.4175 -3.5685 0.0094 10 8 3.6301 -3.4393 0.0035 11 7 1.8712 -4.8005 0.0208 12 6 2.6779 -5.9074 0.0252 13 1 3.7164 -5.8177 0.3077 14 6 2.1603 -7.1456 -0.3339 15 7 1.0683 -7.2152 -1.0627 16 14 3.0159 -8.7115 0.2187 17 1 3.0565 -8.7562 1.7024 18 1 2.2697 -9.8897 -0.2913 19 1 4.4015 -8.7333 -0.3153 20 6 0.4145 -4.9557 0.0284 21 6 -0.0948 -4.8752 -1.3504 22 7 -0.4875 -4.8129 -2.4148 23 1 -0.3633 0.0043 1.0276 24 1 -0.3633 0.8877 -0.5176 25 1 -0.3632 -0.8922 -0.5101 26 1 4.0606 1.4483 0.8858 27 1 4.0511 1.4444 -0.9074 28 1 0.5173 -2.5491 0.0164 29 1 0.7067 -8.0798 -1.3131 30 1 0.1545 -5.9242 0.4557 31 1 -0.0323 -4.1624 0.6277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874261439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -3.040479 kcal Electronic energy + Delta-G solvation = -19467.184086 eV Core-core repulsion = 16262.357281 eV Total energy + Delta-G solvation = -3204.826805 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07767 -40.71507 -38.11808 -37.49078 -36.14005 -33.82388 -32.53362 -31.87172 -29.16721 -28.06362 -26.93507 -24.64639 -21.43590 -20.65818 -19.73951 -19.19172 -18.07484 -18.01749 -17.70712 -17.38651 -16.55813 -16.29734 -15.57146 -15.40535 -15.23013 -14.84580 -14.77609 -14.63525 -13.90356 -13.75140 -13.41387 -13.35308 -13.19796 -12.98928 -12.85851 -12.54417 -12.29736 -12.17071 -12.08578 -12.03237 -11.40969 -11.06982 -10.22032 -9.91062 -9.89919 -8.71250 -8.39140 -5.86977 -0.21130 0.24866 0.87822 1.25256 1.48871 1.52350 1.55888 1.62809 1.98089 2.26080 2.39846 2.52696 2.86985 3.09707 3.35384 3.65332 4.05942 4.07285 4.14001 4.32683 4.40904 4.45498 4.60313 4.65567 4.75703 4.94108 5.03500 5.51590 5.72464 6.09385 6.40212 6.45982 7.03762 7.15575 7.38094 7.97303 8.63952 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.005253 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.395260 B = 5329.130848 C = 6126.566372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.543 5.543 3 C 0.523 3.477 4 O -0.524 6.524 5 C -0.177 4.177 6 S -0.019 6.019 7 C 0.160 3.840 8 C -0.231 4.231 9 C 0.484 3.516 10 O -0.606 6.606 11 N -0.444 5.444 12 C -0.328 4.328 13 H 0.087 0.913 14 C 0.005 3.995 15 N -0.889 5.889 16 Si 0.987 3.013 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.283 1.283 20 C 0.220 3.780 21 C 0.258 3.742 22 N -0.508 5.508 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.166 0.834 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 10.734 6.512 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.265 5.265 3 C 0.312 3.688 4 O -0.400 6.400 5 C -0.327 4.327 6 S 0.222 5.778 7 C -0.054 4.054 8 C -0.268 4.268 9 C 0.279 3.721 10 O -0.495 6.495 11 N -0.162 5.162 12 C -0.456 4.456 13 H 0.105 0.895 14 C -0.198 4.198 15 N -0.528 5.528 16 Si 0.811 3.189 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.209 1.209 20 C 0.094 3.906 21 C -0.060 4.060 22 N -0.188 5.188 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.184 0.816 27 H 0.179 0.821 28 H 0.181 0.819 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.343 10.773 4.859 11.894 hybrid contribution -0.683 -0.571 0.138 0.901 sum -2.026 10.201 4.997 11.539 Atomic orbital electron populations 1.22329 0.75501 1.05431 1.05248 1.44680 1.10505 1.04220 1.67056 1.20119 0.90324 0.83004 0.75384 1.90773 1.72998 1.26613 1.49654 1.24811 0.94622 1.01011 1.12261 1.88235 1.00444 0.98890 1.90236 1.22176 0.94958 0.88294 0.99993 1.20806 1.01267 0.88805 1.15959 1.16553 0.88139 0.83934 0.83516 1.90633 1.16057 1.85421 1.57415 1.43617 1.04693 1.04932 1.62962 1.19627 0.95837 0.85291 1.44851 0.89498 1.25900 0.97585 1.01733 0.94586 1.69961 1.23654 1.27178 1.31984 0.85074 0.77669 0.76803 0.79322 1.18439 1.20622 1.20858 1.19132 0.80510 1.06382 0.84622 1.29786 0.91303 0.89115 0.95768 1.80914 1.11607 1.13573 1.12752 0.88783 0.89104 0.88576 0.81615 0.82099 0.81942 0.91488 0.85695 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 10.06 127.77 1.29 2.40 16 2 N -0.54 -13.77 2.95 -660.46 -1.95 -15.72 16 3 C 0.52 13.12 7.79 88.18 0.69 13.81 16 4 O -0.52 -15.19 16.94 -2.95 -0.05 -15.24 16 5 C -0.18 -3.58 7.36 71.37 0.53 -3.06 16 6 S -0.02 -0.57 20.64 -56.49 -1.17 -1.74 16 7 C 0.16 4.90 7.00 83.54 0.59 5.48 16 8 C -0.23 -7.70 8.28 22.38 0.19 -7.51 16 9 C 0.48 21.03 7.30 84.74 0.62 21.65 16 10 O -0.61 -30.28 13.76 -5.13 -0.07 -30.35 16 11 N -0.44 -19.70 2.60 -656.69 -1.71 -21.40 16 12 C -0.33 -16.38 9.31 84.05 0.78 -15.60 16 13 H 0.09 4.68 7.39 -2.91 -0.02 4.66 16 14 C 0.00 0.22 4.86 84.91 0.41 0.63 16 15 N -0.89 -42.95 9.49 21.66 0.21 -42.75 16 16 Si 0.99 38.75 29.60 68.60 2.03 40.78 16 17 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.22 7.90 4.78 84.58 0.40 8.31 16 21 C 0.26 10.63 13.26 89.44 1.19 11.81 16 22 N -0.51 -23.04 18.54 20.01 0.37 -22.67 16 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 1.71 7.50 -2.39 -0.02 1.69 16 25 H 0.10 1.69 6.61 -2.38 -0.02 1.68 16 26 H 0.17 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.16 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.16 4.27 4.69 -2.91 -0.01 4.25 16 29 H 0.28 12.89 8.31 -92.70 -0.77 12.12 16 30 H 0.13 4.62 6.46 -2.39 -0.02 4.60 16 31 H 0.14 3.43 6.42 -2.39 -0.02 3.41 16 Total: -1.00 -67.73 287.66 5.53 -62.20 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.19 Total: 8.97 kcal Atomic # 6 Polarization: 31.24 SS G_CDS: 6.67 Total: 37.92 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.08 Total: -102.54 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.12 Total: -45.59 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -1.17 Total: -1.74 kcal Total: -67.73 5.53 -62.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.160 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds