Wall clock time and date at job start Wed Apr 15 2020 11:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.32209 * 119.81867 * 2 1 4 4 O 1.21255 * 122.89856 * 0.02642 * 3 2 1 5 5 C 1.51118 * 114.20526 * 180.02562 * 3 2 1 6 6 S 1.82384 * 103.49095 * 359.75038 * 5 3 2 7 7 C 1.36734 * 119.81496 * 180.02562 * 2 1 3 8 8 C 1.36564 * 126.26250 * 359.96940 * 7 2 1 9 9 C 1.40299 * 120.00650 * 321.11796 * 8 7 2 10 10 O 1.21940 * 119.99756 * 3.89321 * 9 8 7 11 11 N 1.34775 * 120.00252 * 183.90014 * 9 8 7 12 12 C 1.36970 * 119.99743 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00616 * 18.50185 * 12 11 9 14 14 C 1.38927 * 119.99822 * 198.50308 * 12 11 9 15 15 N 1.31462 * 119.99945 * 12.56691 * 14 12 11 16 16 Si 1.86800 * 119.99927 * 192.56882 * 14 12 11 17 17 H 1.48498 * 109.46871 * 89.99982 * 16 14 12 18 18 H 1.48502 * 109.47033 * 209.99974 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00058 * 16 14 12 20 20 C 1.46498 * 120.00302 * 359.97438 * 11 9 8 21 21 C 1.47197 * 109.46934 * 83.80773 * 20 11 9 22 22 N 6.25983 * 100.13853 * 165.69342 * 2 1 3 23 23 H 1.09002 * 109.46886 * 276.46849 * 1 2 3 24 24 H 1.09007 * 109.46690 * 36.46154 * 1 2 3 25 25 H 1.09000 * 109.47291 * 156.45924 * 1 2 3 26 26 H 1.08999 * 110.62104 * 118.50460 * 5 3 2 27 27 H 1.09000 * 110.61985 * 241.34770 * 5 3 2 28 28 H 1.08002 * 119.99677 * 141.11630 * 8 7 2 29 29 H 0.97003 * 120.00249 * 179.97438 * 15 14 12 30 30 H 1.08993 * 109.47558 * 203.81157 * 20 11 9 31 31 H 1.09007 * 109.46710 * 323.81415 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0006 6 16 3.8763 -0.8074 0.0066 7 6 2.1448 -1.1863 -0.0005 8 6 1.5911 -2.4347 -0.0005 9 6 0.4424 -2.6927 0.7626 10 8 -0.1027 -1.7862 1.3694 11 7 -0.0585 -3.9423 0.8252 12 6 -1.1796 -4.1942 1.5707 13 1 -1.8301 -3.3818 1.8591 14 6 -1.4799 -5.4947 1.9559 15 7 -0.5792 -6.4434 1.8255 16 14 -3.1635 -5.8954 2.6591 17 1 -4.0831 -6.2740 1.5564 18 1 -3.0445 -7.0259 3.6147 19 1 -3.7011 -4.7049 3.3653 20 6 0.5961 -5.0313 0.0960 21 6 1.7086 -5.5616 0.9009 22 7 2.5669 -5.9710 1.5227 23 1 -0.3633 0.1158 1.0212 24 1 -0.3633 0.8266 -0.6108 25 1 -0.3634 -0.9421 -0.4104 26 1 4.0557 1.4464 -0.8972 27 1 4.0566 1.4483 0.8946 28 1 2.0374 -3.2234 -0.5880 29 1 -0.7887 -7.3515 2.0948 30 1 -0.1251 -5.8258 -0.0951 31 1 0.9809 -4.6541 -0.8517 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874261440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:05 Heat of formation + Delta-G solvation = 36.899882 kcal Electronic energy + Delta-G solvation = -19731.902585 eV Core-core repulsion = 16528.807723 eV Total energy + Delta-G solvation = -3203.094861 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91993 -39.09987 -36.79166 -35.61850 -34.38483 -32.16850 -31.23215 -30.60810 -27.64270 -26.55692 -25.38941 -23.06206 -20.63025 -18.80954 -18.08708 -18.00706 -16.81234 -16.58526 -16.25583 -16.09566 -15.13621 -14.66669 -14.26151 -14.13145 -13.83567 -13.40764 -13.07855 -12.99618 -12.85969 -12.20252 -12.04361 -11.77632 -11.39272 -11.37555 -11.26446 -11.18639 -10.96347 -10.60825 -10.49857 -10.36753 -10.21880 -9.35091 -8.64717 -8.50467 -8.09830 -7.39400 -6.64244 -4.07632 0.75664 1.23754 1.68452 2.50859 2.89786 3.07165 3.14452 3.18591 3.61829 3.90681 3.97377 4.04590 4.19678 4.74575 4.83081 4.90666 5.02955 5.22692 5.49554 5.68917 5.87516 5.95250 6.10052 6.17149 6.38553 6.52019 6.57958 7.13627 7.29642 7.65154 7.81732 8.17881 8.71986 8.89527 9.05288 9.68253 10.38177 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.005610 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.025578 B = 4989.500390 C = 5925.465995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.521 5.521 3 C 0.513 3.487 4 O -0.501 6.501 5 C -0.143 4.143 6 S -0.090 6.090 7 C 0.172 3.828 8 C -0.234 4.234 9 C 0.484 3.516 10 O -0.594 6.594 11 N -0.427 5.427 12 C -0.287 4.287 13 H 0.113 0.887 14 C 0.026 3.974 15 N -0.874 5.874 16 Si 0.937 3.063 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.217 3.783 21 C 0.247 3.753 22 N -0.473 5.473 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.277 0.723 30 H 0.138 0.862 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 6.515 -7.987 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.240 5.240 3 C 0.299 3.701 4 O -0.376 6.376 5 C -0.294 4.294 6 S 0.151 5.849 7 C -0.044 4.044 8 C -0.271 4.271 9 C 0.278 3.722 10 O -0.482 6.482 11 N -0.145 5.145 12 C -0.415 4.415 13 H 0.131 0.869 14 C -0.178 4.178 15 N -0.513 5.513 16 Si 0.763 3.237 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.192 1.192 20 C 0.090 3.910 21 C -0.071 4.071 22 N -0.153 5.153 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.030 6.178 -6.722 10.941 hybrid contribution -1.973 0.172 0.269 1.999 sum 4.057 6.350 -6.453 9.921 Atomic orbital electron populations 1.22385 0.74980 1.02686 1.04475 1.44938 1.10693 1.04456 1.63900 1.19685 0.88954 0.84115 0.77319 1.90778 1.72019 1.26278 1.48570 1.24360 0.97217 0.97761 1.10070 1.86886 1.03847 1.02405 1.91754 1.21883 0.92641 0.88505 1.01324 1.21049 1.04474 0.94035 1.07510 1.16188 0.85171 0.84052 0.86750 1.90762 1.63137 1.42680 1.51638 1.43712 1.23587 1.05368 1.41835 1.19929 0.98253 0.94352 1.28995 0.86928 1.25446 0.99891 0.95689 0.96808 1.69815 1.32950 1.02887 1.45677 0.85726 0.80738 0.78450 0.78764 1.19958 1.20868 1.19197 1.18954 0.89915 0.92331 0.89812 1.29297 0.91960 0.92309 0.93538 1.80917 1.15190 1.10222 1.09010 0.88872 0.92808 0.88809 0.84379 0.83937 0.84029 0.91225 0.84454 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 8.18 59.85 0.49 2.16 16 2 N -0.52 -8.64 2.92 -122.23 -0.36 -9.00 16 3 C 0.51 7.82 7.79 -11.91 -0.09 7.72 16 4 O -0.50 -8.82 17.04 5.58 0.10 -8.73 16 5 C -0.14 -1.56 7.36 36.21 0.27 -1.30 16 6 S -0.09 -1.18 23.35 -107.50 -2.51 -3.69 16 7 C 0.17 2.83 6.68 -15.97 -0.11 2.73 16 8 C -0.23 -4.13 8.47 -39.41 -0.33 -4.46 16 9 C 0.48 10.34 6.25 -15.49 -0.10 10.24 16 10 O -0.59 -14.02 11.28 4.97 0.06 -13.97 16 11 N -0.43 -9.37 2.60 -121.59 -0.32 -9.69 16 12 C -0.29 -6.90 9.36 -15.00 -0.14 -7.04 16 13 H 0.11 2.82 7.34 -52.49 -0.39 2.44 16 14 C 0.03 0.60 5.09 -17.45 -0.09 0.51 16 15 N -0.87 -20.72 9.04 55.50 0.50 -20.21 16 16 Si 0.94 18.69 29.57 -169.99 -5.03 13.66 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 C 0.22 4.09 4.79 -6.83 -0.03 4.05 16 21 C 0.25 5.29 13.40 -20.75 -0.28 5.01 16 22 N -0.47 -11.02 18.54 42.16 0.78 -10.24 16 23 H 0.09 1.81 6.67 -51.93 -0.35 1.47 16 24 H 0.05 0.84 7.68 -51.92 -0.40 0.44 16 25 H 0.09 1.67 5.61 -51.93 -0.29 1.38 16 26 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.14 2.16 6.05 -52.49 -0.32 1.84 16 29 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.14 2.65 6.19 -51.93 -0.32 2.33 16 31 H 0.08 1.19 6.39 -51.93 -0.33 0.86 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -29.60 283.57 -5.29 -34.89 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -2.37 Total: 3.06 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: -0.41 Total: 19.64 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.61 Total: -49.14 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.15 Total: -22.70 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.51 Total: -3.69 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.60 -5.29 -34.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.793 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds