Wall clock time and date at job start Wed Apr 15 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.32209 * 119.81867 * 2 1 4 4 O 1.21255 * 122.89856 * 0.02642 * 3 2 1 5 5 C 1.51118 * 114.20526 * 180.02562 * 3 2 1 6 6 S 1.82384 * 103.49095 * 359.75038 * 5 3 2 7 7 C 1.36734 * 119.81496 * 180.02562 * 2 1 3 8 8 C 1.36564 * 126.26250 * 359.96940 * 7 2 1 9 9 C 1.40299 * 120.00650 * 321.11796 * 8 7 2 10 10 O 1.21940 * 119.99756 * 3.89321 * 9 8 7 11 11 N 1.34775 * 120.00252 * 183.90014 * 9 8 7 12 12 C 1.36970 * 119.99743 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00616 * 18.50185 * 12 11 9 14 14 C 1.38927 * 119.99822 * 198.50308 * 12 11 9 15 15 N 1.31462 * 119.99945 * 12.56691 * 14 12 11 16 16 Si 1.86800 * 119.99927 * 192.56882 * 14 12 11 17 17 H 1.48498 * 109.46871 * 89.99982 * 16 14 12 18 18 H 1.48502 * 109.47033 * 209.99974 * 16 14 12 19 19 H 1.48495 * 109.47212 * 330.00058 * 16 14 12 20 20 C 1.46498 * 120.00302 * 359.97438 * 11 9 8 21 21 C 1.47197 * 109.46934 * 83.80773 * 20 11 9 22 22 N 6.25983 * 100.13853 * 165.69342 * 2 1 3 23 23 H 1.09002 * 109.46886 * 276.46849 * 1 2 3 24 24 H 1.09007 * 109.46690 * 36.46154 * 1 2 3 25 25 H 1.09000 * 109.47291 * 156.45924 * 1 2 3 26 26 H 1.08999 * 110.62104 * 118.50460 * 5 3 2 27 27 H 1.09000 * 110.61985 * 241.34770 * 5 3 2 28 28 H 1.08002 * 119.99677 * 141.11630 * 8 7 2 29 29 H 0.97003 * 120.00249 * 179.97438 * 15 14 12 30 30 H 1.08993 * 109.47558 * 203.81157 * 20 11 9 31 31 H 1.09007 * 109.46710 * 323.81415 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0006 6 16 3.8763 -0.8074 0.0066 7 6 2.1448 -1.1863 -0.0005 8 6 1.5911 -2.4347 -0.0005 9 6 0.4424 -2.6927 0.7626 10 8 -0.1027 -1.7862 1.3694 11 7 -0.0585 -3.9423 0.8252 12 6 -1.1796 -4.1942 1.5707 13 1 -1.8301 -3.3818 1.8591 14 6 -1.4799 -5.4947 1.9559 15 7 -0.5792 -6.4434 1.8255 16 14 -3.1635 -5.8954 2.6591 17 1 -4.0831 -6.2740 1.5564 18 1 -3.0445 -7.0259 3.6147 19 1 -3.7011 -4.7049 3.3653 20 6 0.5961 -5.0313 0.0960 21 6 1.7086 -5.5616 0.9009 22 7 2.5669 -5.9710 1.5227 23 1 -0.3633 0.1158 1.0212 24 1 -0.3633 0.8266 -0.6108 25 1 -0.3634 -0.9421 -0.4104 26 1 4.0557 1.4464 -0.8972 27 1 4.0566 1.4483 0.8946 28 1 2.0374 -3.2234 -0.5880 29 1 -0.7887 -7.3515 2.0948 30 1 -0.1251 -5.8258 -0.0951 31 1 0.9809 -4.6541 -0.8517 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874261440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:04 Heat of formation + Delta-G solvation = 18.029845 kcal Electronic energy + Delta-G solvation = -19732.720851 eV Core-core repulsion = 16528.807723 eV Total energy + Delta-G solvation = -3203.913127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.25565 -40.66046 -38.23590 -37.24236 -36.08387 -33.83907 -32.52430 -31.88506 -29.21706 -27.90403 -26.95898 -24.52172 -22.02599 -20.21107 -19.75230 -19.27404 -18.27603 -18.04265 -17.69219 -17.50117 -16.53941 -16.21798 -15.76370 -15.46965 -15.09686 -14.89882 -14.65776 -14.24262 -14.09809 -13.81532 -13.52926 -13.40873 -13.05366 -12.93939 -12.78854 -12.40423 -12.38360 -12.25306 -12.11939 -11.98848 -11.45090 -11.04288 -10.18746 -9.91747 -9.76191 -8.64173 -8.35502 -5.88483 -0.54907 0.07317 0.55080 1.25158 1.47525 1.50097 1.59460 1.65721 1.98625 2.28234 2.38785 2.53537 2.86675 3.13149 3.35000 3.70593 3.97459 4.09074 4.18355 4.41291 4.47865 4.54832 4.72445 4.76764 4.99269 5.09219 5.10379 5.49515 5.83017 6.12235 6.37815 6.47768 7.06718 7.17440 7.40305 8.02259 8.64959 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.024794 B = 0.005610 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.025578 B = 4989.500390 C = 5925.465995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.533 5.533 3 C 0.510 3.490 4 O -0.524 6.524 5 C -0.132 4.132 6 S -0.048 6.048 7 C 0.189 3.811 8 C -0.269 4.269 9 C 0.489 3.511 10 O -0.625 6.625 11 N -0.447 5.447 12 C -0.316 4.316 13 H 0.088 0.912 14 C -0.002 4.002 15 N -0.896 5.896 16 Si 0.990 3.010 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.220 3.780 21 C 0.262 3.738 22 N -0.513 5.513 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.167 0.833 29 H 0.274 0.726 30 H 0.133 0.867 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 7.893 -9.344 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.252 5.252 3 C 0.299 3.701 4 O -0.401 6.401 5 C -0.283 4.283 6 S 0.194 5.806 7 C -0.027 4.027 8 C -0.306 4.306 9 C 0.285 3.715 10 O -0.515 6.515 11 N -0.165 5.165 12 C -0.444 4.444 13 H 0.106 0.894 14 C -0.203 4.203 15 N -0.535 5.535 16 Si 0.815 3.185 17 H -0.185 1.185 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.094 3.906 21 C -0.056 4.056 22 N -0.194 5.194 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.198 0.802 27 H 0.190 0.810 28 H 0.184 0.816 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.031 7.567 -8.100 13.688 hybrid contribution -2.404 0.117 0.641 2.491 sum 5.626 7.684 -7.459 12.097 Atomic orbital electron populations 1.22103 0.76024 1.02746 1.02870 1.45236 1.10622 1.05366 1.63963 1.20402 0.90795 0.83125 0.75820 1.90778 1.73079 1.27025 1.49185 1.24614 0.93595 0.96494 1.13558 1.86906 0.99419 1.03923 1.90394 1.22415 0.95161 0.88158 0.97015 1.20902 1.04065 0.95570 1.10077 1.16719 0.85147 0.83410 0.86258 1.90753 1.64272 1.43647 1.52865 1.43723 1.23893 1.06150 1.42761 1.19739 0.99739 0.94109 1.30799 0.89404 1.25943 1.02176 0.95291 0.96895 1.69898 1.33799 1.02784 1.47060 0.84943 0.78034 0.77265 0.78219 1.18501 1.21352 1.20359 1.19200 0.88983 0.91675 0.90766 1.29828 0.91642 0.91275 0.92851 1.80903 1.16739 1.11561 1.10173 0.91688 0.91301 0.89762 0.80235 0.81019 0.81572 0.91545 0.84984 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.65 8.18 127.77 1.05 4.69 16 2 N -0.53 -16.69 2.92 -660.45 -1.93 -18.62 16 3 C 0.51 13.96 7.79 88.18 0.69 14.64 16 4 O -0.52 -17.19 17.04 -2.95 -0.05 -17.24 16 5 C -0.13 -2.20 7.36 71.37 0.53 -1.68 16 6 S -0.05 -1.07 23.35 -56.49 -1.32 -2.39 16 7 C 0.19 5.78 6.68 83.54 0.56 6.34 16 8 C -0.27 -9.12 8.47 22.38 0.19 -8.93 16 9 C 0.49 21.08 6.25 84.74 0.53 21.61 16 10 O -0.62 -30.41 11.28 -5.12 -0.06 -30.47 16 11 N -0.45 -19.92 2.60 -656.70 -1.71 -21.62 16 12 C -0.32 -15.71 9.36 84.06 0.79 -14.92 16 13 H 0.09 4.68 7.34 -2.91 -0.02 4.65 16 14 C 0.00 -0.08 5.09 84.91 0.43 0.35 16 15 N -0.90 -43.20 9.04 21.66 0.20 -43.01 16 16 Si 0.99 39.35 29.57 68.60 2.03 41.38 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 18 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 20 C 0.22 8.19 4.79 84.57 0.40 8.59 16 21 C 0.26 11.12 13.40 89.44 1.20 12.31 16 22 N -0.51 -23.86 18.54 20.01 0.37 -23.49 16 23 H 0.06 2.61 6.67 -2.39 -0.02 2.60 16 24 H 0.07 2.12 7.68 -2.38 -0.02 2.10 16 25 H 0.08 3.05 5.61 -2.39 -0.01 3.04 16 26 H 0.18 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.17 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.17 4.67 6.05 -2.91 -0.02 4.65 16 29 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.13 5.11 6.19 -2.39 -0.01 5.09 16 31 H 0.13 3.51 6.39 -2.38 -0.02 3.50 16 Total: -1.00 -66.52 283.57 5.08 -61.43 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.19 Total: 11.01 kcal Atomic # 6 Polarization: 36.66 SS G_CDS: 6.36 Total: 43.02 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.07 Total: -106.74 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.11 Total: -47.71 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -1.32 Total: -2.39 kcal Total: -66.52 5.08 -61.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.463 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds