Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99703 * 2 1 4 4 H 1.48505 * 109.47022 * 240.00282 * 3 2 1 5 5 H 1.48505 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46991 * 120.00062 * 3 2 1 7 7 C 1.37870 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00765 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00088 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64000 * 298.31557 * 9 7 2 11 11 C 1.55154 * 110.87849 * 175.06647 * 9 7 2 12 12 C 1.55122 * 101.49113 * 205.89711 * 11 9 7 13 13 N 1.47428 * 104.72267 * 37.29295 * 12 11 9 14 14 C 1.34774 * 125.65373 * 155.81733 * 13 12 11 15 15 O 1.21279 * 120.00174 * 179.69494 * 14 13 12 16 16 C 1.50701 * 119.99420 * 359.69285 * 14 13 12 17 17 S 1.81406 * 109.46661 * 179.97438 * 16 14 13 18 18 C 1.81404 * 102.99818 * 179.97438 * 17 16 14 19 19 F 1.39905 * 109.47128 * 59.99986 * 18 17 16 20 20 F 1.39900 * 109.47153 * 300.00308 * 18 17 16 21 21 C 1.47032 * 108.70112 * 335.55639 * 13 12 11 22 22 H 0.96999 * 120.00326 * 359.97438 * 1 2 3 23 23 H 0.96698 * 114.00192 * 61.68465 * 10 9 7 24 24 H 1.09009 * 110.99802 * 324.13997 * 11 9 7 25 25 H 1.08998 * 111.00438 * 87.94333 * 11 9 7 26 26 H 1.08995 * 110.50217 * 278.45601 * 12 11 9 27 27 H 1.08995 * 110.34546 * 156.05315 * 12 11 9 28 28 H 1.08997 * 109.47396 * 60.00073 * 16 14 13 29 29 H 1.09001 * 109.47041 * 299.99552 * 16 14 13 30 30 H 1.09004 * 109.47147 * 180.02562 * 18 17 16 31 31 H 1.08994 * 109.88186 * 120.70513 * 21 13 12 32 32 H 1.08997 * 109.87934 * 241.87006 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1771 11 6 2.2255 -3.7000 -0.1259 12 6 1.3106 -4.7743 -0.7701 13 7 0.4608 -4.0256 -1.7139 14 6 -0.1464 -4.5395 -2.8019 15 8 -0.8298 -3.8282 -3.5076 16 6 0.0238 -5.9978 -3.1414 17 16 -0.9098 -6.3805 -4.6489 18 6 -0.5858 -8.1488 -4.8917 19 9 -1.0436 -8.8638 -3.7796 20 9 0.7896 -8.3543 -5.0442 21 6 0.3803 -2.6268 -1.2682 22 1 -0.4850 0.8400 0.0004 23 1 -0.2277 -1.9345 1.2627 24 1 3.0651 -3.4556 -0.7768 25 1 2.5753 -4.0233 0.8546 26 1 0.6976 -5.2592 -0.0104 27 1 1.9100 -5.5124 -1.3030 28 1 -0.3488 -6.6083 -2.3189 29 1 1.0802 -6.2122 -3.3036 30 1 -1.1058 -8.4942 -5.7853 31 1 0.7611 -1.9669 -2.0476 32 1 -0.6533 -2.3710 -1.0352 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -174.165441 kcal Electronic energy + Delta-G solvation = -20089.582375 eV Core-core repulsion = 16426.645848 eV Total energy + Delta-G solvation = -3662.936527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.37864 -47.46652 -39.53331 -37.34203 -34.40572 -32.28330 -30.88007 -29.54074 -27.72384 -27.11198 -24.98896 -22.76074 -19.82579 -19.33277 -18.18498 -17.86263 -17.67577 -17.28736 -16.69728 -15.87595 -15.49465 -15.07617 -14.56330 -14.42025 -14.27489 -13.81392 -13.73355 -13.46704 -13.09586 -12.95469 -12.64039 -12.13069 -11.75010 -11.71771 -11.48804 -11.08782 -10.89532 -10.76096 -10.54947 -10.37041 -10.24388 -9.64507 -9.39633 -8.72708 -8.39618 -8.35812 -8.03771 -6.33234 -4.42385 0.63992 1.70549 2.87695 3.19988 3.26152 3.27620 3.43891 3.52904 4.13461 4.20758 4.23452 4.62603 4.86655 4.95027 5.09251 5.27668 5.60283 5.70574 5.91719 6.02668 6.40284 6.65150 6.76324 6.81992 7.17668 7.28428 7.67732 7.92778 8.02425 8.45806 8.61418 9.22939 9.32409 10.74619 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.035184 B = 0.004007 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.633539 B = 6985.866255 C = 7226.811544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.097 3.903 13 N -0.605 5.605 14 C 0.537 3.463 15 O -0.532 6.532 16 C -0.123 4.123 17 S -0.150 6.150 18 C 0.264 3.736 19 F -0.190 7.190 20 F -0.190 7.190 21 C 0.105 3.895 22 H 0.271 0.729 23 H 0.383 0.617 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -14.341 -6.247 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.155 4.155 12 C -0.026 4.026 13 N -0.338 5.338 14 C 0.322 3.678 15 O -0.410 6.410 16 C -0.274 4.274 17 S 0.072 5.928 18 C 0.101 3.899 19 F -0.172 7.172 20 F -0.172 7.172 21 C -0.016 4.016 22 H 0.081 0.919 23 H 0.233 0.767 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.168 0.832 31 H 0.088 0.912 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.452 -13.748 -7.182 15.517 hybrid contribution 0.878 0.446 0.715 1.217 sum 0.426 -13.301 -6.467 14.796 Atomic orbital electron populations 1.69676 1.06020 1.28166 1.49390 1.25068 0.95055 0.99813 0.93260 0.86447 0.79547 0.82011 0.78841 1.19986 1.21031 1.19954 1.21448 0.93671 0.90034 1.52681 0.91513 1.19502 0.86490 0.92117 0.81095 1.86109 1.51834 1.56632 1.44762 1.22787 0.97362 0.94936 1.00406 1.22465 0.92933 0.95267 0.91954 1.48726 1.47798 1.13211 1.24060 1.18972 0.80646 0.87155 0.81027 1.90735 1.39772 1.60637 1.49820 1.23644 1.04634 1.00210 0.98943 1.88330 1.66637 1.02873 1.34965 1.24531 0.79499 0.94939 0.90883 1.93100 1.88423 1.80129 1.55524 1.93098 1.32305 1.95744 1.96046 1.23107 1.02002 0.77576 0.98943 0.91852 0.76683 0.90289 0.90323 0.91275 0.91903 0.86499 0.86490 0.83232 0.91208 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.42 10.96 55.43 0.61 -22.81 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.77 8.13 -34.44 -0.28 -14.05 16 8 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 9 C 0.25 5.79 0.85 -89.94 -0.08 5.72 16 10 O -0.58 -14.19 13.07 -35.23 -0.46 -14.65 16 11 C -0.12 -2.20 6.24 -24.47 -0.15 -2.36 16 12 C 0.10 1.58 6.69 -2.41 -0.02 1.57 16 13 N -0.60 -11.85 3.33 -170.39 -0.57 -12.42 16 14 C 0.54 10.17 7.87 -10.99 -0.09 10.09 16 15 O -0.53 -12.09 16.19 5.56 0.09 -12.00 16 16 C -0.12 -1.71 5.40 36.01 0.19 -1.51 16 17 S -0.15 -1.99 21.11 -107.50 -2.27 -4.26 16 18 C 0.26 2.50 5.91 101.05 0.60 3.10 16 19 F -0.19 -2.03 17.36 2.25 0.04 -2.00 16 20 F -0.19 -2.03 17.36 2.25 0.04 -1.99 16 21 C 0.10 2.46 5.24 -3.06 -0.02 2.44 16 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 23 H 0.38 9.56 7.45 45.56 0.34 9.90 16 24 H 0.08 1.43 8.05 -51.92 -0.42 1.01 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.81 7.48 -51.93 -0.39 0.42 16 28 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.12 1.40 7.85 -51.92 -0.41 0.99 16 30 H 0.15 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.07 1.80 7.81 -51.93 -0.41 1.39 16 32 H 0.07 1.76 7.91 -51.93 -0.41 1.35 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -29.24 297.05 -5.92 -35.16 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -2.93 Total: 8.63 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 0.07 Total: 6.73 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.04 Total: -35.23 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.37 Total: -26.65 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.27 Total: -4.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.24 -5.92 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.002 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds