Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47098 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54231 * 291.62190 * 11 10 9 13 13 O 1.42101 * 110.53946 * 68.37457 * 11 10 9 14 14 N 1.65598 * 104.44695 * 179.97438 * 11 10 9 15 15 C 1.48144 * 127.84188 * 90.00233 * 14 11 10 16 16 C 1.54381 * 104.61832 * 140.41252 * 15 14 11 17 17 H 1.09004 * 117.61628 * 244.78284 * 16 15 14 18 18 C 1.54282 * 104.96401 * 23.86902 * 16 15 14 19 19 H 1.09003 * 121.81762 * 222.18055 * 18 16 15 20 20 C 1.48150 * 127.83387 * 269.68289 * 14 11 10 21 21 C 1.52998 * 118.12476 * 87.19653 * 16 15 14 22 22 F 1.39902 * 117.44286 * 16.10189 * 21 16 15 23 23 F 1.39895 * 117.44556 * 160.80923 * 21 16 15 24 24 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 26 26 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 28 28 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 29 29 H 1.09004 * 110.40699 * 259.20291 * 15 14 11 30 30 H 1.09005 * 110.40327 * 21.50842 * 15 14 11 31 31 H 1.08996 * 110.41030 * 338.36423 * 20 14 11 32 32 H 1.08993 * 110.41156 * 100.80763 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6649 -5.4194 1.2386 13 8 0.6640 -5.4200 -1.2354 14 7 2.5207 -6.3927 0.0005 15 6 3.1703 -7.0290 1.1700 16 6 3.3231 -8.5126 0.7714 17 1 2.7638 -9.2506 1.3465 18 6 3.3220 -8.5127 -0.7714 19 1 2.7734 -9.2594 -1.3457 20 6 3.1640 -7.0337 -1.1700 21 6 4.5774 -8.9264 -0.0009 22 9 5.6569 -8.0365 -0.0017 23 9 4.9160 -10.2838 -0.0011 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8904 26 1 0.6248 -2.5571 -0.8896 27 1 2.8720 -3.6043 -0.8895 28 1 2.8721 -3.6042 0.8905 29 1 4.1475 -6.5817 1.3520 30 1 2.5392 -6.9340 2.0537 31 1 2.5273 -6.9442 -2.0501 32 1 4.1402 -6.5873 -1.3590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846032591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -134.289674 kcal Electronic energy + Delta-G solvation = -20175.868589 eV Core-core repulsion = 16514.661205 eV Total energy + Delta-G solvation = -3661.207384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.02722 -47.69335 -39.50717 -36.83334 -35.67218 -34.30818 -33.18452 -31.08466 -29.03048 -25.39386 -24.86622 -22.00599 -21.71216 -21.13701 -18.89881 -18.26083 -17.68624 -17.24106 -16.77821 -16.29082 -15.84405 -15.83876 -14.52939 -14.41862 -14.19759 -14.12579 -13.83826 -13.80652 -13.56770 -13.03257 -12.89962 -12.51858 -12.15223 -12.00888 -12.00678 -11.82312 -11.70652 -11.07410 -10.98309 -10.60511 -10.54482 -10.39642 -10.24795 -10.10838 -9.34809 -8.69961 -8.49721 -6.51286 -4.24574 0.46160 2.52158 2.52974 2.84367 3.37213 3.38758 3.58018 3.65404 3.79335 4.11253 4.22568 4.30766 4.44434 4.62253 4.63074 4.99395 5.13296 5.23851 5.29799 5.39363 5.41672 5.46335 5.52052 5.54324 5.86413 6.06876 6.26272 6.90178 7.00383 7.91367 8.25738 8.68645 9.47804 10.88541 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.004102 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.611713 B = 6824.581725 C = 7285.984745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.017 3.983 3 Si 1.074 2.926 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.601 4.601 8 H 0.055 0.945 9 C 0.014 3.986 10 C -0.579 4.579 11 S 2.608 3.392 12 O -0.958 6.958 13 O -0.958 6.958 14 N -1.021 6.021 15 C 0.144 3.856 16 C -0.168 4.168 17 H 0.147 0.853 18 C -0.168 4.168 19 H 0.146 0.854 20 C 0.144 3.856 21 C 0.230 3.770 22 F -0.156 7.156 23 F -0.155 7.155 24 H 0.270 0.730 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 -17.795 -0.002 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.188 4.188 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.640 4.640 8 H 0.074 0.926 9 C -0.025 4.025 10 C -0.713 4.713 11 S 2.708 3.292 12 O -0.948 6.948 13 O -0.948 6.948 14 N -0.855 5.855 15 C 0.018 3.982 16 C -0.189 4.189 17 H 0.165 0.835 18 C -0.189 4.189 19 H 0.164 0.836 20 C 0.019 3.981 21 C 0.193 3.807 22 F -0.137 7.137 23 F -0.136 7.136 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.068 -16.269 -0.001 18.160 hybrid contribution 1.102 -1.681 0.001 2.010 sum 9.170 -17.950 0.000 20.157 Atomic orbital electron populations 1.70789 1.06890 1.30801 1.45475 1.25982 0.96517 1.02935 0.93376 0.83477 0.74867 0.74948 0.76631 1.20520 1.21263 1.21258 1.21830 0.94375 0.90673 1.57157 0.92624 1.19093 0.93383 0.92360 0.97653 1.30381 1.13421 1.16993 1.10503 1.05342 0.73856 0.75856 0.74123 1.93544 1.70668 1.85193 1.45419 1.93544 1.70649 1.85182 1.45452 1.59839 1.57904 1.55552 1.12244 1.21502 0.99214 0.87851 0.89597 1.25070 0.97095 1.00657 0.96079 0.83546 1.25004 0.97081 1.00678 0.96140 0.83582 1.21408 0.99295 0.87847 0.89570 1.20036 0.80232 0.73309 1.07132 1.93031 1.57474 1.66341 1.96806 1.93041 1.93490 1.30165 1.96879 0.91944 0.95706 0.95709 0.85924 0.85937 0.89857 0.87692 0.87679 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.65 55.43 0.76 -26.59 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 24.55 29.90 -169.99 -5.08 19.47 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.60 -16.61 9.11 -34.44 -0.31 -16.93 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.35 4.29 -27.88 -0.12 0.23 16 10 C -0.58 -10.79 6.12 37.16 0.23 -10.56 16 11 S 2.61 44.43 5.74 -107.50 -0.62 43.81 16 12 O -0.96 -18.76 17.37 -57.54 -1.00 -19.76 16 13 O -0.96 -18.76 17.36 -57.54 -1.00 -19.75 16 14 N -1.02 -12.93 3.64 -110.52 -0.40 -13.33 16 15 C 0.14 1.49 6.86 -2.41 -0.02 1.47 16 16 C -0.17 -1.47 7.12 -89.23 -0.63 -2.11 16 17 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.17 -1.47 7.10 -89.43 -0.63 -2.11 16 19 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 20 C 0.14 1.49 6.84 -2.62 -0.02 1.48 16 21 C 0.23 2.16 5.12 -26.73 -0.14 2.02 16 22 F -0.16 -1.66 16.24 2.25 0.04 -1.62 16 23 F -0.16 -1.54 17.60 2.25 0.04 -1.50 16 24 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 25 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 26 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 27 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 28 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 29 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 30 H 0.10 1.06 7.64 -51.93 -0.40 0.67 16 31 H 0.10 1.07 7.63 -51.93 -0.40 0.67 16 32 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -34.52 294.95 -8.17 -42.69 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.61 Total: -1.74 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -1.74 Total: -26.12 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.35 Total: -39.92 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -2.00 Total: -39.51 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Atomic # 16 Polarization: 44.43 SS G_CDS: -0.62 Total: 43.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.52 -8.17 -42.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846032591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.600 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds