Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86802 * 120.00322 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00119 * 3 2 1 5 5 H 1.48509 * 109.46833 * 29.99546 * 3 2 1 6 6 H 1.48492 * 109.47223 * 149.99627 * 3 2 1 7 7 C 1.38755 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00154 * 0.02562 * 7 2 1 9 9 O 1.34917 * 119.99855 * 179.97438 * 7 2 1 10 10 C 1.34316 * 117.00043 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99950 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.73614 * 336.92606 * 12 10 9 14 14 C 1.52911 * 109.58415 * 216.52712 * 12 10 9 15 15 N 1.45754 * 110.49708 * 290.96930 * 14 12 10 16 16 C 1.33352 * 124.10550 * 340.96695 * 15 14 12 17 17 O 1.21273 * 118.24539 * 182.18075 * 16 15 14 18 18 C 1.50174 * 123.50855 * 2.19685 * 16 15 14 19 19 C 1.53078 * 109.89253 * 342.41750 * 18 16 15 20 20 H 1.08999 * 109.67407 * 289.13146 * 19 18 16 21 21 C 1.52999 * 109.67130 * 168.63547 * 19 18 16 22 22 F 1.39897 * 109.47418 * 60.00405 * 21 19 18 23 23 F 1.39902 * 109.46842 * 180.02562 * 21 19 18 24 24 F 1.39902 * 109.47259 * 299.99976 * 21 19 18 25 25 H 0.96999 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.28169 * 170.66299 * 14 12 10 27 27 H 1.09007 * 109.14264 * 51.18847 * 14 12 10 28 28 H 0.97001 * 117.94429 * 160.93723 * 15 14 12 29 29 H 1.09008 * 109.40145 * 222.29329 * 18 16 15 30 30 H 1.08992 * 109.40402 * 102.54900 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4401 0.7001 7 6 2.0081 -1.2017 0.0005 8 1 1.4681 -2.1369 0.0005 9 8 3.3573 -1.2017 0.0000 10 6 3.9671 -2.3984 0.0000 11 8 3.3069 -3.4150 0.0001 12 6 5.4720 -2.4773 0.0001 13 1 5.8890 -1.5539 -0.4020 14 6 5.9233 -3.6602 -0.8574 15 7 5.5676 -4.9201 -0.2166 16 6 5.2782 -5.0444 1.0792 17 8 5.0351 -6.1519 1.5093 18 6 5.2367 -3.8862 2.0342 19 6 5.9762 -2.6884 1.4327 20 1 7.0477 -2.8875 1.4197 21 6 5.6949 -1.4374 2.2674 22 9 6.1351 -1.6433 3.5793 23 9 6.3721 -0.3455 1.7138 24 9 4.3199 -1.1792 2.2720 25 1 -0.4850 0.8400 -0.0004 26 1 7.0043 -3.6164 -0.9908 27 1 5.4374 -3.6016 -1.8314 28 1 5.5393 -5.7181 -0.7674 29 1 5.7136 -4.1726 2.9716 30 1 4.1994 -3.6121 2.2262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873453989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -263.331115 kcal Electronic energy + Delta-G solvation = -24058.009934 eV Core-core repulsion = 19824.993718 eV Total energy + Delta-G solvation = -4233.016217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.93958 -47.48722 -47.28537 -40.73976 -38.93693 -36.71485 -35.03489 -33.70227 -32.37221 -30.17114 -26.91980 -26.01438 -24.06450 -22.38077 -20.98440 -18.85692 -18.33335 -18.12505 -17.96663 -17.77648 -17.27833 -16.21416 -16.00173 -15.53106 -15.10988 -14.76366 -14.30808 -14.14165 -13.96595 -13.80457 -13.63905 -13.47326 -13.37070 -13.28191 -13.13439 -12.67632 -12.40723 -11.99598 -11.69456 -11.51669 -11.39842 -11.19642 -10.52940 -10.41541 -9.77913 -9.75181 -9.36492 -8.91401 -8.73515 -6.43355 -4.18151 2.73554 2.79876 2.90503 3.19969 3.21495 3.33880 3.38408 3.68837 3.80231 3.92230 4.06728 4.20178 4.48391 4.61265 4.70506 4.83718 4.98487 5.08627 5.22008 5.38363 5.46512 5.52695 5.80050 6.17015 6.84562 7.40059 7.63165 7.96327 8.33688 8.49865 8.94234 9.56479 10.64551 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.008546 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.182565 B = 3275.608776 C = 4005.078017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.375 4.375 8 H 0.110 0.890 9 O -0.236 6.236 10 C 0.398 3.602 11 O -0.524 6.524 12 C -0.096 4.096 13 H 0.125 0.875 14 C 0.135 3.865 15 N -0.708 5.708 16 C 0.550 3.450 17 O -0.558 6.558 18 C -0.138 4.138 19 C -0.126 4.126 20 H 0.132 0.868 21 C 0.450 3.550 22 F -0.184 7.184 23 F -0.180 7.180 24 F -0.153 7.153 25 H 0.280 0.720 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.402 0.598 29 H 0.113 0.887 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.135 -1.718 0.358 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.451 4.451 8 H 0.128 0.872 9 O -0.143 6.143 10 C 0.243 3.757 11 O -0.419 6.419 12 C -0.116 4.116 13 H 0.143 0.857 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.337 3.663 17 O -0.437 6.437 18 C -0.178 4.178 19 C -0.146 4.146 20 H 0.150 0.850 21 C 0.396 3.604 22 F -0.166 7.166 23 F -0.162 7.162 24 F -0.134 7.134 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.238 0.762 29 H 0.131 0.869 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.622 -2.160 0.751 15.788 hybrid contribution 0.057 0.963 -0.171 0.979 sum 15.679 -1.198 0.580 15.735 Atomic orbital electron populations 1.69599 1.05742 1.28525 1.46923 1.24526 0.94947 0.98654 0.95387 0.86313 0.80699 0.81692 0.78958 1.19837 1.20675 1.17997 1.20609 0.75877 0.96908 1.51665 0.87225 1.83516 1.24142 1.30790 1.75880 1.22275 0.89314 0.83378 0.80717 1.90663 1.66174 1.35865 1.49205 1.21215 0.93318 1.02285 0.94745 0.85684 1.21145 0.99960 0.81656 0.96219 1.45128 1.70415 1.11082 1.09301 1.19327 0.74786 0.89620 0.82530 1.90734 1.50062 1.26526 1.76393 1.21797 1.04908 0.91799 0.99257 1.22551 1.04698 0.92815 0.94548 0.85019 1.20341 0.75793 0.85548 0.78708 1.93170 1.89569 1.94983 1.38873 1.93178 1.80209 1.57616 1.85160 1.93391 1.29373 1.94587 1.96060 0.90934 0.90021 0.89134 0.76198 0.86916 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.96 55.48 0.77 -24.50 16 2 C 0.07 1.94 5.49 -17.53 -0.10 1.84 16 3 Si 0.90 20.98 28.62 -169.99 -4.86 16.12 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.38 -10.65 10.10 30.92 0.31 -10.34 16 8 H 0.11 3.47 7.09 -52.49 -0.37 3.10 16 9 O -0.24 -5.75 6.97 -20.71 -0.14 -5.90 16 10 C 0.40 8.28 4.67 36.01 0.17 8.45 16 11 O -0.52 -12.46 12.92 -19.05 -0.25 -12.71 16 12 C -0.10 -1.33 2.58 -91.64 -0.24 -1.56 16 13 H 0.13 1.47 7.67 -51.93 -0.40 1.07 16 14 C 0.14 1.45 6.36 -4.49 -0.03 1.42 16 15 N -0.71 -9.35 4.86 -61.39 -0.30 -9.65 16 16 C 0.55 8.98 6.50 -11.87 -0.08 8.90 16 17 O -0.56 -11.07 17.78 5.56 0.10 -10.97 16 18 C -0.14 -2.05 4.46 -28.10 -0.13 -2.17 16 19 C -0.13 -1.60 2.14 -90.40 -0.19 -1.79 16 20 H 0.13 1.11 8.13 -51.93 -0.42 0.68 16 21 C 0.45 6.74 2.70 37.16 0.10 6.84 16 22 F -0.18 -2.57 17.02 2.25 0.04 -2.53 16 23 F -0.18 -2.64 16.75 2.25 0.04 -2.60 16 24 F -0.15 -3.01 13.32 2.25 0.03 -2.98 16 25 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.95 8.11 -51.92 -0.42 0.52 16 28 H 0.40 4.76 8.80 -40.82 -0.36 4.40 16 29 H 0.11 1.41 8.11 -51.92 -0.42 0.99 16 30 H 0.12 2.20 6.37 -51.93 -0.33 1.87 16 LS Contribution 269.24 15.07 4.06 4.06 Total: -1.00 -34.47 269.24 -2.98 -37.44 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -2.28 Total: 2.63 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.18 Total: 11.59 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.48 Total: -34.15 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.29 Total: -29.57 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.11 Total: -8.11 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.47 -2.98 -37.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873453989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.889 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds