Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86802 * 120.00322 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00119 * 3 2 1 5 5 H 1.48509 * 109.46833 * 29.99546 * 3 2 1 6 6 H 1.48492 * 109.47223 * 149.99627 * 3 2 1 7 7 C 1.38755 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00154 * 0.02562 * 7 2 1 9 9 O 1.34917 * 119.99855 * 179.97438 * 7 2 1 10 10 C 1.34316 * 117.00043 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99950 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.73614 * 336.92606 * 12 10 9 14 14 C 1.52911 * 109.58415 * 216.52712 * 12 10 9 15 15 N 1.45754 * 110.49708 * 290.96930 * 14 12 10 16 16 C 1.33352 * 124.10550 * 340.96695 * 15 14 12 17 17 O 1.21273 * 118.24539 * 182.18075 * 16 15 14 18 18 C 1.50174 * 123.50855 * 2.19685 * 16 15 14 19 19 C 1.53078 * 109.89253 * 342.41750 * 18 16 15 20 20 H 1.08999 * 109.67407 * 289.13146 * 19 18 16 21 21 C 1.52999 * 109.67130 * 168.63547 * 19 18 16 22 22 F 1.39897 * 109.47418 * 60.00405 * 21 19 18 23 23 F 1.39902 * 109.46842 * 180.02562 * 21 19 18 24 24 F 1.39902 * 109.47259 * 299.99976 * 21 19 18 25 25 H 0.96999 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.28169 * 170.66299 * 14 12 10 27 27 H 1.09007 * 109.14264 * 51.18847 * 14 12 10 28 28 H 0.97001 * 117.94429 * 160.93723 * 15 14 12 29 29 H 1.09008 * 109.40145 * 222.29329 * 18 16 15 30 30 H 1.08992 * 109.40402 * 102.54900 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4401 0.7001 7 6 2.0081 -1.2017 0.0005 8 1 1.4681 -2.1369 0.0005 9 8 3.3573 -1.2017 0.0000 10 6 3.9671 -2.3984 0.0000 11 8 3.3069 -3.4150 0.0001 12 6 5.4720 -2.4773 0.0001 13 1 5.8890 -1.5539 -0.4020 14 6 5.9233 -3.6602 -0.8574 15 7 5.5676 -4.9201 -0.2166 16 6 5.2782 -5.0444 1.0792 17 8 5.0351 -6.1519 1.5093 18 6 5.2367 -3.8862 2.0342 19 6 5.9762 -2.6884 1.4327 20 1 7.0477 -2.8875 1.4197 21 6 5.6949 -1.4374 2.2674 22 9 6.1351 -1.6433 3.5793 23 9 6.3721 -0.3455 1.7138 24 9 4.3199 -1.1792 2.2720 25 1 -0.4850 0.8400 -0.0004 26 1 7.0043 -3.6164 -0.9908 27 1 5.4374 -3.6016 -1.8314 28 1 5.5393 -5.7181 -0.7674 29 1 5.7136 -4.1726 2.9716 30 1 4.1994 -3.6121 2.2262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873453989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -289.745500 kcal Electronic energy + Delta-G solvation = -24059.155348 eV Core-core repulsion = 19824.993718 eV Total energy + Delta-G solvation = -4234.161630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.13153 -48.61275 -48.58247 -42.10250 -40.54664 -38.16395 -36.77480 -34.81506 -34.45091 -31.39953 -28.13684 -27.82250 -25.37550 -23.62631 -22.42134 -20.32044 -20.08386 -19.50678 -19.23769 -18.99082 -18.63392 -17.71626 -17.24828 -16.92975 -16.63929 -16.19279 -15.83292 -15.48414 -15.34929 -14.98696 -14.89491 -14.70888 -14.67945 -14.60677 -14.50550 -14.26044 -13.87496 -13.49697 -13.19599 -12.90952 -12.57527 -12.50696 -12.33289 -12.23501 -11.86327 -11.09930 -11.02545 -10.81135 -10.04525 -8.53198 -6.37075 1.22660 1.32821 1.46806 1.53967 1.57775 1.61457 2.17906 2.27532 2.34165 2.66792 2.74291 2.90144 2.97277 3.40598 3.51641 3.59441 3.69293 3.99184 4.27670 4.31763 4.43345 4.58418 4.64774 4.70846 5.51054 5.80496 5.90261 6.26536 6.56657 6.85366 7.15599 7.59992 8.59870 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.008546 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.182565 B = 3275.608776 C = 4005.078017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.389 4.389 8 H 0.055 0.945 9 O -0.245 6.245 10 C 0.403 3.597 11 O -0.558 6.558 12 C -0.093 4.093 13 H 0.162 0.838 14 C 0.132 3.868 15 N -0.701 5.701 16 C 0.543 3.457 17 O -0.605 6.605 18 C -0.138 4.138 19 C -0.113 4.113 20 H 0.196 0.804 21 C 0.446 3.554 22 F -0.179 7.179 23 F -0.174 7.174 24 F -0.189 7.189 25 H 0.287 0.713 26 H 0.150 0.850 27 H 0.096 0.904 28 H 0.409 0.591 29 H 0.135 0.865 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.157 -0.501 -0.455 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.791 3.209 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.466 4.466 8 H 0.073 0.927 9 O -0.154 6.154 10 C 0.250 3.750 11 O -0.453 6.453 12 C -0.112 4.112 13 H 0.179 0.821 14 C 0.009 3.991 15 N -0.351 5.351 16 C 0.331 3.669 17 O -0.488 6.488 18 C -0.178 4.178 19 C -0.132 4.132 20 H 0.213 0.787 21 C 0.391 3.609 22 F -0.160 7.160 23 F -0.155 7.155 24 F -0.170 7.170 25 H 0.096 0.904 26 H 0.168 0.832 27 H 0.114 0.886 28 H 0.246 0.754 29 H 0.153 0.847 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.663 -0.948 -0.102 19.686 hybrid contribution -1.149 0.411 0.090 1.223 sum 18.514 -0.537 -0.012 18.522 Atomic orbital electron populations 1.69710 1.07628 1.29951 1.48728 1.25475 0.95818 1.02519 0.94509 0.85237 0.79318 0.76365 0.79955 1.17920 1.19814 1.17149 1.20155 0.77828 0.95246 1.53338 0.92709 1.83539 1.21700 1.32614 1.77535 1.23959 0.92440 0.81796 0.76840 1.90663 1.68134 1.36928 1.49568 1.21567 0.87091 1.05786 0.96767 0.82077 1.21615 1.03856 0.78673 0.94974 1.45191 1.68848 1.12628 1.08404 1.19563 0.74551 0.89216 0.83616 1.90708 1.52368 1.28212 1.77496 1.21731 1.03050 0.92535 1.00497 1.22724 1.07733 0.90245 0.92494 0.78731 1.20695 0.74233 0.86521 0.79410 1.93182 1.89237 1.94955 1.38626 1.93188 1.79742 1.57545 1.85034 1.93332 1.32510 1.94918 1.96262 0.90350 0.83243 0.88578 0.75417 0.84691 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.68 13.96 21.62 0.30 -55.38 16 2 C 0.02 0.94 5.49 84.88 0.47 1.41 16 3 Si 0.97 43.13 28.62 68.60 1.96 45.09 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.39 -23.12 10.10 67.94 0.69 -22.44 16 8 H 0.05 3.76 7.09 -2.91 -0.02 3.74 16 9 O -0.25 -12.02 6.97 14.85 0.10 -11.91 16 10 C 0.40 16.57 4.67 71.24 0.33 16.91 16 11 O -0.56 -27.30 12.92 20.78 0.27 -27.03 16 12 C -0.09 -2.19 2.58 -11.46 -0.03 -2.22 16 13 H 0.16 2.80 7.67 -2.39 -0.02 2.79 16 14 C 0.13 2.15 6.36 86.49 0.55 2.70 16 15 N -0.70 -16.49 4.86 -467.33 -2.27 -18.76 16 16 C 0.54 17.00 6.50 87.71 0.57 17.57 16 17 O -0.61 -24.07 17.78 -3.01 -0.05 -24.12 16 18 C -0.14 -3.90 4.46 29.71 0.13 -3.77 16 19 C -0.11 -2.39 2.14 -10.65 -0.02 -2.41 16 20 H 0.20 1.82 8.13 -2.39 -0.02 1.80 16 21 C 0.45 12.05 2.70 71.98 0.19 12.24 16 22 F -0.18 -4.49 17.02 44.97 0.77 -3.73 16 23 F -0.17 -4.36 16.75 44.97 0.75 -3.61 16 24 F -0.19 -7.35 13.32 44.97 0.60 -6.76 16 25 H 0.29 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.15 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.10 1.57 8.11 -2.38 -0.02 1.55 16 28 H 0.41 8.71 8.80 -92.71 -0.82 7.89 16 29 H 0.14 3.12 8.11 -2.38 -0.02 3.10 16 30 H 0.08 2.96 6.37 -2.39 -0.02 2.94 16 Total: -1.00 -83.03 269.24 5.71 -77.32 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.40 Total: 8.90 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 2.88 Total: 19.98 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.97 Total: -74.13 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: 0.32 Total: -63.07 kcal Atomic # 9 Polarization: -16.21 SS G_CDS: 2.12 Total: -14.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.96 Total: 45.09 kcal Total: -83.03 5.71 -77.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873453989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.427 kcal (2) G-P(sol) polarization free energy of solvation -83.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -295.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds