Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47237 * 240.00079 * 3 2 1 5 5 H 1.48497 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46995 * 120.00430 * 3 2 1 7 7 C 1.38751 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.34306 * 117.00024 * 179.97438 * 9 7 2 11 11 O 1.21214 * 120.00378 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00146 * 179.72594 * 10 9 7 13 13 H 1.09001 * 109.59984 * 5.66062 * 12 10 9 14 14 C 1.52918 * 109.60559 * 125.98053 * 12 10 9 15 15 N 1.45812 * 110.45506 * 170.34132 * 14 12 10 16 16 C 1.33356 * 124.16443 * 341.24547 * 15 14 12 17 17 O 1.21282 * 118.24294 * 182.06533 * 16 15 14 18 18 C 1.50177 * 123.51010 * 2.04934 * 16 15 14 19 19 C 1.53066 * 109.89116 * 342.41312 * 18 16 15 20 20 H 1.09004 * 109.67283 * 289.17327 * 19 18 16 21 21 C 1.52992 * 109.70440 * 168.65355 * 19 18 16 22 22 F 1.39902 * 109.47030 * 295.07753 * 21 19 18 23 23 F 1.39897 * 109.47403 * 55.07651 * 21 19 18 24 24 F 1.39902 * 109.47362 * 175.08231 * 21 19 18 25 25 H 0.96999 * 120.00126 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.29991 * 290.82646 * 14 12 10 27 27 H 1.08998 * 109.30266 * 50.19878 * 14 12 10 28 28 H 0.96998 * 117.89269 * 161.07274 * 15 14 12 29 29 H 1.08996 * 109.39714 * 222.28576 * 18 16 15 30 30 H 1.08999 * 109.32898 * 102.49954 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1020 1.6966 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1022 1.6965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0652 -3.4964 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3811 -4.8392 0.0046 13 1 0.3041 -4.7014 -0.0919 14 6 1.8967 -5.6831 -1.1618 15 7 1.4237 -7.0574 -1.0447 16 6 0.9674 -7.5986 0.0855 17 8 0.6360 -8.7652 0.0703 18 6 0.8421 -6.8409 1.3761 19 6 1.6909 -5.5685 1.3175 20 1 2.7484 -5.8310 1.3506 21 6 1.3473 -4.6641 2.5026 22 9 0.0224 -4.2295 2.3888 23 9 1.5027 -5.3788 3.6951 24 9 2.2024 -3.5569 2.5077 25 1 -0.4850 0.8400 0.0004 26 1 1.5423 -5.2559 -2.0999 27 1 2.9867 -5.6778 -1.1562 28 1 1.4400 -7.6123 -1.8401 29 1 1.1858 -7.4679 2.1987 30 1 -0.2020 -6.5725 1.5370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873453990.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -271.136670 kcal Electronic energy + Delta-G solvation = -23532.609562 eV Core-core repulsion = 19299.254871 eV Total energy + Delta-G solvation = -4233.354691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82569 -47.35213 -47.18690 -40.60251 -39.09005 -36.74932 -35.10006 -33.79525 -32.24438 -30.23133 -26.93815 -25.80044 -24.19790 -22.32998 -20.84169 -19.25859 -18.20641 -18.02658 -17.92561 -17.71918 -17.22462 -16.36829 -16.20054 -15.34548 -14.75070 -14.55429 -14.45896 -14.31935 -14.03311 -13.88893 -13.64669 -13.57528 -13.33656 -13.26959 -13.21800 -12.65550 -12.07627 -11.79636 -11.60023 -11.54141 -11.40081 -11.14032 -10.51682 -10.46575 -10.01774 -9.92997 -9.30528 -9.13767 -8.65990 -6.49822 -4.17202 2.45770 2.82086 2.90198 3.08973 3.14920 3.18262 3.30871 3.67282 3.86704 3.92352 4.08617 4.31496 4.61391 4.68832 4.78456 4.86931 4.96159 5.09148 5.16260 5.41387 5.46096 5.59550 5.85782 6.48238 6.58291 7.11101 7.30468 7.84069 8.01435 8.55335 8.98151 9.69121 10.67082 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.006282 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.001075 B = 4456.171934 C = 5000.693596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.379 4.379 8 H 0.097 0.903 9 O -0.199 6.199 10 C 0.392 3.608 11 O -0.544 6.544 12 C -0.088 4.088 13 H 0.115 0.885 14 C 0.126 3.874 15 N -0.714 5.714 16 C 0.530 3.470 17 O -0.555 6.555 18 C -0.132 4.132 19 C -0.126 4.126 20 H 0.130 0.870 21 C 0.454 3.546 22 F -0.172 7.172 23 F -0.186 7.186 24 F -0.159 7.159 25 H 0.272 0.728 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.405 0.595 29 H 0.119 0.881 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -9.744 0.793 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.455 4.455 8 H 0.115 0.885 9 O -0.105 6.105 10 C 0.238 3.762 11 O -0.441 6.441 12 C -0.108 4.108 13 H 0.133 0.867 14 C 0.001 3.999 15 N -0.367 5.367 16 C 0.316 3.684 17 O -0.433 6.433 18 C -0.172 4.172 19 C -0.145 4.145 20 H 0.148 0.852 21 C 0.399 3.601 22 F -0.154 7.154 23 F -0.168 7.168 24 F -0.140 7.140 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.241 0.759 29 H 0.137 0.863 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.074 -9.972 1.021 10.081 hybrid contribution 0.354 0.944 -0.076 1.011 sum 1.427 -9.028 0.944 9.189 Atomic orbital electron populations 1.69978 1.06025 1.28038 1.45421 1.25355 0.95819 0.98930 0.95950 0.85741 0.78693 0.79322 0.79444 1.19388 1.20310 1.19368 1.21188 0.92398 0.79477 1.52450 0.88494 1.83866 1.39162 1.13215 1.74210 1.22246 0.86595 0.86494 0.80903 1.90582 1.15016 1.87636 1.50882 1.20983 1.03873 0.92166 0.93802 0.86665 1.21274 1.00642 0.79914 0.98027 1.45457 1.64919 1.14033 1.12246 1.19734 0.76343 0.87125 0.85168 1.90774 1.50113 1.16823 1.85613 1.21752 1.03157 0.94924 0.97375 1.22533 1.05096 0.94779 0.92133 0.85181 1.20254 0.75453 0.80610 0.83751 1.93224 1.35721 1.90488 1.95943 1.93156 1.95471 1.78149 1.50024 1.93329 1.69899 1.54570 1.96165 0.91844 0.88714 0.89348 0.75887 0.86260 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.29 13.67 55.48 0.76 -23.54 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 3 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.38 -10.65 9.65 30.92 0.30 -10.35 16 8 H 0.10 2.74 6.86 -52.49 -0.36 2.38 16 9 O -0.20 -5.29 9.74 -20.70 -0.20 -5.49 16 10 C 0.39 8.62 4.22 36.01 0.15 8.77 16 11 O -0.54 -12.98 15.47 -19.06 -0.29 -13.27 16 12 C -0.09 -1.39 1.98 -91.63 -0.18 -1.57 16 13 H 0.12 1.77 7.91 -51.93 -0.41 1.36 16 14 C 0.13 1.54 6.45 -4.46 -0.03 1.51 16 15 N -0.71 -7.91 5.45 -61.35 -0.33 -8.25 16 16 C 0.53 6.84 7.71 -11.87 -0.09 6.75 16 17 O -0.55 -8.89 17.78 5.56 0.10 -8.79 16 18 C -0.13 -1.55 5.02 -28.10 -0.14 -1.69 16 19 C -0.13 -1.76 1.93 -90.41 -0.17 -1.93 16 20 H 0.13 1.70 8.13 -51.93 -0.42 1.28 16 21 C 0.45 7.54 2.56 37.15 0.10 7.64 16 22 F -0.17 -3.07 16.26 2.25 0.04 -3.04 16 23 F -0.19 -2.77 16.84 2.25 0.04 -2.73 16 24 F -0.16 -3.30 14.73 2.25 0.03 -3.27 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.10 7.74 -51.93 -0.40 0.70 16 28 H 0.40 3.75 8.80 -40.82 -0.36 3.39 16 29 H 0.12 1.22 8.04 -51.93 -0.42 0.80 16 30 H 0.12 1.28 7.69 -51.93 -0.40 0.88 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -33.12 277.46 -3.20 -36.33 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -2.33 Total: 2.01 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.17 Total: 10.24 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.42 Total: -31.78 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.40 Total: -27.55 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 0.11 Total: -9.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.12 -3.20 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873453990.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -234.810 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds