Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48500 * 109.47237 * 240.00079 * 3 2 1 5 5 H 1.48497 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46995 * 120.00430 * 3 2 1 7 7 C 1.38751 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.34306 * 117.00024 * 179.97438 * 9 7 2 11 11 O 1.21214 * 120.00378 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00146 * 179.72594 * 10 9 7 13 13 H 1.09001 * 109.59984 * 5.66062 * 12 10 9 14 14 C 1.52918 * 109.60559 * 125.98053 * 12 10 9 15 15 N 1.45812 * 110.45506 * 170.34132 * 14 12 10 16 16 C 1.33356 * 124.16443 * 341.24547 * 15 14 12 17 17 O 1.21282 * 118.24294 * 182.06533 * 16 15 14 18 18 C 1.50177 * 123.51010 * 2.04934 * 16 15 14 19 19 C 1.53066 * 109.89116 * 342.41312 * 18 16 15 20 20 H 1.09004 * 109.67283 * 289.17327 * 19 18 16 21 21 C 1.52992 * 109.70440 * 168.65355 * 19 18 16 22 22 F 1.39902 * 109.47030 * 295.07753 * 21 19 18 23 23 F 1.39897 * 109.47403 * 55.07651 * 21 19 18 24 24 F 1.39902 * 109.47362 * 175.08231 * 21 19 18 25 25 H 0.96999 * 120.00126 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.29991 * 290.82646 * 14 12 10 27 27 H 1.08998 * 109.30266 * 50.19878 * 14 12 10 28 28 H 0.96998 * 117.89269 * 161.07274 * 15 14 12 29 29 H 1.08996 * 109.39714 * 222.28576 * 18 16 15 30 30 H 1.08999 * 109.32898 * 102.49954 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1020 1.6966 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1022 1.6965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0652 -3.4964 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3811 -4.8392 0.0046 13 1 0.3041 -4.7014 -0.0919 14 6 1.8967 -5.6831 -1.1618 15 7 1.4237 -7.0574 -1.0447 16 6 0.9674 -7.5986 0.0855 17 8 0.6360 -8.7652 0.0703 18 6 0.8421 -6.8409 1.3761 19 6 1.6909 -5.5685 1.3175 20 1 2.7484 -5.8310 1.3506 21 6 1.3473 -4.6641 2.5026 22 9 0.0224 -4.2295 2.3888 23 9 1.5027 -5.3788 3.6951 24 9 2.2024 -3.5569 2.5077 25 1 -0.4850 0.8400 0.0004 26 1 1.5423 -5.2559 -2.0999 27 1 2.9867 -5.6778 -1.1562 28 1 1.4400 -7.6123 -1.8401 29 1 1.1858 -7.4679 2.1987 30 1 -0.2020 -6.5725 1.5370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873453990.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -294.673633 kcal Electronic energy + Delta-G solvation = -23533.630201 eV Core-core repulsion = 19299.254871 eV Total energy + Delta-G solvation = -4234.375330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.21130 -48.69574 -48.66112 -41.84649 -40.73876 -38.13481 -36.87749 -34.88320 -34.27078 -31.46600 -28.13161 -27.67292 -25.56471 -23.65710 -22.30612 -20.52453 -19.88333 -19.56132 -19.41113 -19.06214 -18.67046 -17.75322 -17.38882 -16.76216 -16.34438 -16.21219 -15.94070 -15.73261 -15.46812 -15.13392 -15.04079 -14.80748 -14.76861 -14.67371 -14.50774 -14.28655 -13.60151 -13.24208 -13.12659 -12.99849 -12.62763 -12.51590 -12.25764 -12.17089 -11.97969 -11.13115 -11.05413 -10.67385 -10.23545 -8.51710 -6.29660 1.23580 1.35550 1.43516 1.50466 1.54885 1.57305 1.93981 2.18339 2.49448 2.61799 2.67498 2.89820 3.01998 3.44670 3.48911 3.58828 3.63822 3.78247 4.09344 4.41752 4.48035 4.59847 4.63343 4.77579 5.19698 5.67895 5.84194 6.11004 6.65243 6.93955 7.03436 7.74699 8.67977 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.024555 B = 0.006282 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.001075 B = 4456.171934 C = 5000.693596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.003 4.003 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.410 4.410 8 H 0.085 0.915 9 O -0.232 6.232 10 C 0.402 3.598 11 O -0.562 6.562 12 C -0.085 4.085 13 H 0.121 0.879 14 C 0.136 3.864 15 N -0.699 5.699 16 C 0.533 3.467 17 O -0.584 6.584 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.143 0.857 21 C 0.447 3.553 22 F -0.182 7.182 23 F -0.174 7.174 24 F -0.188 7.188 25 H 0.277 0.723 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.417 0.583 29 H 0.140 0.860 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -10.513 0.494 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.203 4.203 3 Si 0.830 3.170 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.486 4.486 8 H 0.102 0.898 9 O -0.140 6.140 10 C 0.248 3.752 11 O -0.459 6.459 12 C -0.105 4.105 13 H 0.139 0.861 14 C 0.012 3.988 15 N -0.352 5.352 16 C 0.321 3.679 17 O -0.465 6.465 18 C -0.163 4.163 19 C -0.135 4.135 20 H 0.161 0.839 21 C 0.393 3.607 22 F -0.163 7.163 23 F -0.155 7.155 24 F -0.170 7.170 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.256 0.744 29 H 0.158 0.842 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.461 -10.765 0.701 10.887 hybrid contribution 0.273 1.050 0.053 1.087 sum 1.735 -9.715 0.755 9.897 Atomic orbital electron populations 1.70063 1.07556 1.29316 1.46746 1.26439 0.96779 1.02219 0.94892 0.84780 0.77683 0.74799 0.79780 1.18245 1.18771 1.19000 1.21316 0.92113 0.80843 1.54284 0.89755 1.83891 1.40138 1.14047 1.75909 1.23343 0.86574 0.87442 0.77797 1.90559 1.16245 1.88245 1.50869 1.21106 1.03712 0.89246 0.96479 0.86122 1.21195 1.00723 0.79845 0.97033 1.45291 1.63983 1.13410 1.12474 1.19814 0.75888 0.86650 0.85595 1.90780 1.51679 1.18034 1.86018 1.21781 1.03357 0.93498 0.97704 1.22566 1.06453 0.94807 0.89635 0.83880 1.20673 0.74615 0.80190 0.85184 1.93206 1.36326 1.90702 1.96064 1.93177 1.95337 1.77516 1.49497 1.93270 1.70856 1.56467 1.96374 0.91324 0.86974 0.88998 0.74419 0.84158 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.74 13.67 21.62 0.30 -51.44 16 2 C 0.00 -0.14 5.49 84.87 0.47 0.33 16 3 Si 1.01 42.26 29.55 68.60 2.03 44.28 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.41 -23.56 9.65 67.94 0.66 -22.91 16 8 H 0.08 4.90 6.86 -2.91 -0.02 4.88 16 9 O -0.23 -12.65 9.74 14.87 0.14 -12.50 16 10 C 0.40 17.66 4.22 71.24 0.30 17.96 16 11 O -0.56 -26.85 15.47 20.76 0.32 -26.53 16 12 C -0.09 -2.57 1.98 -11.45 -0.02 -2.59 16 13 H 0.12 3.54 7.91 -2.39 -0.02 3.53 16 14 C 0.14 3.00 6.45 86.48 0.56 3.56 16 15 N -0.70 -13.42 5.45 -467.19 -2.55 -15.97 16 16 C 0.53 12.26 7.71 87.71 0.68 12.94 16 17 O -0.58 -17.28 17.78 -3.04 -0.05 -17.33 16 18 C -0.12 -2.55 5.02 29.71 0.15 -2.40 16 19 C -0.11 -2.99 1.93 -10.66 -0.02 -3.02 16 20 H 0.14 3.40 8.13 -2.39 -0.02 3.38 16 21 C 0.45 14.50 2.56 71.98 0.18 14.68 16 22 F -0.18 -6.40 16.26 44.97 0.73 -5.66 16 23 F -0.17 -4.89 16.84 44.97 0.76 -4.13 16 24 F -0.19 -7.92 14.73 44.97 0.66 -7.26 16 25 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.09 2.05 7.74 -2.39 -0.02 2.03 16 28 H 0.42 6.44 8.80 -92.71 -0.82 5.63 16 29 H 0.14 2.39 8.04 -2.39 -0.02 2.37 16 30 H 0.13 2.43 7.69 -2.39 -0.02 2.42 16 Total: -1.00 -72.72 277.46 5.69 -67.04 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.40 Total: 10.96 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 2.95 Total: 18.55 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -2.25 Total: -67.41 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: 0.41 Total: -56.37 kcal Atomic # 9 Polarization: -19.21 SS G_CDS: 2.15 Total: -17.06 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -72.72 5.69 -67.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873453990.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.638 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds