Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00616 * 2 1 4 4 H 1.48498 * 109.47328 * 240.00463 * 3 2 1 5 5 H 1.48506 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47389 * 119.99889 * 3 2 1 7 7 C 1.37882 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99749 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47120 * 299.99460 * 9 7 2 11 11 N 1.46504 * 109.46674 * 179.97438 * 9 7 2 12 12 C 1.34780 * 119.99794 * 155.00046 * 11 9 7 13 13 O 1.21282 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99809 * 179.97438 * 12 11 9 15 15 H 1.09004 * 115.56198 * 57.25955 * 14 12 11 16 16 C 1.52998 * 117.49915 * 202.94639 * 14 12 11 17 17 C 1.53001 * 117.50168 * 271.57055 * 14 12 11 18 18 H 1.08997 * 117.51837 * 145.03297 * 17 14 12 19 19 C 1.50691 * 117.49543 * 0.02562 * 17 14 12 20 20 O 1.20830 * 120.00064 * 312.33378 * 19 17 14 21 21 O 1.34231 * 120.00372 * 132.33970 * 19 17 14 22 22 C 1.53001 * 109.47246 * 60.00414 * 9 7 2 23 23 F 1.39904 * 109.46967 * 179.97438 * 22 9 7 24 24 F 1.39899 * 109.46553 * 299.99342 * 22 9 7 25 25 F 1.39896 * 109.47372 * 59.99443 * 22 9 7 26 26 H 0.97006 * 119.99825 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00455 * 334.99879 * 11 9 7 28 28 H 1.08994 * 117.49919 * 0.02562 * 16 14 12 29 29 H 1.09006 * 117.51896 * 214.97041 * 16 14 12 30 30 H 0.96694 * 117.00256 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 2.2027 -3.6128 -0.0018 12 6 1.8369 -4.8126 0.4913 13 8 0.7195 -4.9706 0.9355 14 6 2.8159 -5.9582 0.4895 15 1 3.7542 -5.7758 1.0134 16 6 2.2439 -7.3764 0.5380 17 6 2.8632 -6.8452 -0.7563 18 1 3.8324 -7.2466 -1.0522 19 6 1.9276 -6.5059 -1.8878 20 8 0.7608 -6.2879 -1.6623 21 8 2.3904 -6.4460 -3.1464 22 6 0.3707 -2.5799 -1.2495 23 9 -0.3285 -3.7917 -1.2497 24 9 -0.5383 -1.5165 -1.2488 25 9 1.1746 -2.5056 -2.3920 26 1 -0.4850 0.8401 0.0004 27 1 3.0963 -3.4866 -0.3574 28 1 1.1594 -7.4808 0.5707 29 1 2.8057 -8.1274 1.0935 30 1 1.7525 -6.2250 -3.8387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899835887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -261.023722 kcal Electronic energy + Delta-G solvation = -23777.830620 eV Core-core repulsion = 19544.914459 eV Total energy + Delta-G solvation = -4232.916161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.40505 -48.02541 -47.73778 -41.74665 -40.34196 -37.65260 -36.76864 -36.34279 -34.45387 -30.52823 -26.91818 -26.56471 -25.30053 -23.01050 -21.79284 -21.15505 -19.65302 -19.02339 -18.87205 -18.63533 -18.43178 -17.68992 -16.97952 -16.83257 -16.63622 -16.03950 -15.70350 -15.01557 -14.95914 -14.79462 -14.54687 -14.43170 -14.27762 -14.06176 -13.97200 -13.79707 -13.07862 -12.91200 -12.80051 -12.62926 -12.54584 -12.25363 -11.78916 -11.70292 -11.60689 -11.53600 -10.84400 -10.69658 -10.06549 -8.22670 -6.54622 0.96943 1.44915 1.47758 1.56429 1.67815 1.95103 2.21363 2.37910 2.55628 2.81617 2.92506 3.51386 3.67628 3.72938 3.82436 3.90475 4.20840 4.25911 4.34915 4.77461 4.85642 4.91396 5.11882 5.40431 5.52646 5.62730 5.63120 6.50240 6.70956 6.98349 7.15058 7.37681 8.69973 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.006731 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.361453 B = 4158.732321 C = 4414.957677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.011 3.989 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.253 3.747 10 H 0.041 0.959 11 N -0.704 5.704 12 C 0.519 3.481 13 O -0.567 6.567 14 C -0.157 4.157 15 H 0.190 0.810 16 C -0.104 4.104 17 C -0.139 4.139 18 H 0.190 0.810 19 C 0.480 3.520 20 O -0.532 6.532 21 O -0.508 6.508 22 C 0.411 3.589 23 F -0.211 7.211 24 F -0.154 7.154 25 F -0.206 7.206 26 H 0.268 0.732 27 H 0.413 0.587 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 -11.302 -2.160 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.599 4.599 8 H 0.113 0.887 9 C 0.146 3.854 10 H 0.059 0.941 11 N -0.355 5.355 12 C 0.306 3.694 13 O -0.445 6.445 14 C -0.177 4.177 15 H 0.207 0.793 16 C -0.141 4.141 17 C -0.158 4.158 18 H 0.207 0.793 19 C 0.323 3.677 20 O -0.421 6.421 21 O -0.321 6.321 22 C 0.355 3.645 23 F -0.193 7.193 24 F -0.136 7.136 25 F -0.188 7.188 26 H 0.078 0.922 27 H 0.249 0.751 28 H 0.099 0.901 29 H 0.187 0.813 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 10.106 -11.332 -1.504 15.258 hybrid contribution -0.714 1.270 -1.106 1.829 sum 9.392 -10.062 -2.610 14.009 Atomic orbital electron populations 1.70557 1.07661 1.28207 1.44664 1.26080 0.95910 1.03946 0.93431 0.85177 0.77961 0.76489 0.79501 1.18942 1.21095 1.18385 1.21213 0.94572 0.88243 1.55837 0.88734 1.19264 0.88945 0.87720 0.89477 0.94104 1.45879 1.17043 1.10022 1.62521 1.20558 0.87962 0.83957 0.76878 1.90687 1.23212 1.83381 1.47202 1.22521 1.02670 0.90710 1.01818 0.79297 1.23284 1.01938 0.94309 0.94549 1.22028 1.02538 1.06057 0.85180 0.79255 1.23094 0.87464 0.72862 0.84287 1.90907 1.20740 1.45631 1.84867 1.84399 1.47549 1.82462 1.17655 1.23309 0.80970 0.72557 0.87706 1.93143 1.81449 1.47742 1.96962 1.93362 1.69111 1.54768 1.96328 1.92962 1.74249 1.96197 1.55345 0.92218 0.75071 0.90084 0.81260 0.71715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.01 9.50 21.45 0.20 -49.81 16 2 C 0.01 0.60 5.20 84.66 0.44 1.04 16 3 Si 0.99 40.86 29.54 68.60 2.03 42.88 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.56 -28.85 8.46 25.60 0.22 -28.63 16 8 H 0.09 4.39 7.74 -2.91 -0.02 4.37 16 9 C 0.25 13.17 2.21 44.25 0.10 13.27 16 10 H 0.04 2.47 7.58 -2.39 -0.02 2.45 16 11 N -0.70 -28.98 4.98 -446.09 -2.22 -31.21 16 12 C 0.52 20.49 5.30 87.65 0.46 20.95 16 13 O -0.57 -28.36 14.83 -1.86 -0.03 -28.39 16 14 C -0.16 -3.73 6.18 -11.54 -0.07 -3.81 16 15 H 0.19 2.67 8.14 -2.38 -0.02 2.65 16 16 C -0.10 -2.13 9.56 30.59 0.29 -1.83 16 17 C -0.14 -2.83 6.30 -11.54 -0.07 -2.91 16 18 H 0.19 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.48 14.30 7.60 71.23 0.54 14.84 16 20 O -0.53 -21.80 14.66 23.89 0.35 -21.45 16 21 O -0.51 -12.10 13.42 -51.43 -0.69 -12.79 16 22 C 0.41 22.44 2.81 71.98 0.20 22.64 16 23 F -0.21 -11.86 14.57 44.97 0.66 -11.20 16 24 F -0.15 -9.16 12.91 44.97 0.58 -8.58 16 25 F -0.21 -10.52 16.94 44.97 0.76 -9.75 16 26 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 27 H 0.41 14.09 8.54 -92.71 -0.79 13.30 16 28 H 0.08 2.38 7.54 -2.39 -0.02 2.36 16 29 H 0.17 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.42 7.89 9.10 -74.06 -0.67 7.21 16 Total: -1.00 -78.95 279.53 3.52 -75.44 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.23 Total: 19.29 kcal Atomic # 6 Polarization: 33.45 SS G_CDS: 2.11 Total: 35.56 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.02 Total: -81.02 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -0.37 Total: -62.62 kcal Atomic # 9 Polarization: -31.53 SS G_CDS: 2.00 Total: -29.53 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -78.95 3.52 -75.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899835887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.586 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds