Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00255 * 2 1 4 4 H 1.48496 * 109.47286 * 239.99892 * 3 2 1 5 5 H 1.48506 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47400 * 119.99971 * 3 2 1 7 7 C 1.37879 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00087 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47359 * 60.00401 * 9 7 2 11 11 N 1.46504 * 109.46910 * 180.02562 * 9 7 2 12 12 C 1.34780 * 119.99794 * 205.00052 * 11 9 7 13 13 O 1.21282 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99809 * 179.97438 * 12 11 9 15 15 H 1.09009 * 115.56304 * 61.51247 * 14 12 11 16 16 C 1.53003 * 117.49889 * 207.19937 * 14 12 11 17 17 C 1.52999 * 117.50457 * 275.82266 * 14 12 11 18 18 H 1.08994 * 117.52253 * 145.02507 * 17 14 12 19 19 C 1.50703 * 117.49312 * 0.02562 * 17 14 12 20 20 O 1.20831 * 119.99958 * 312.78159 * 19 17 14 21 21 O 1.34232 * 119.99810 * 132.77815 * 19 17 14 22 22 C 1.52995 * 109.47209 * 299.99886 * 9 7 2 23 23 F 1.39901 * 109.47211 * 299.99972 * 22 9 7 24 24 F 1.39899 * 109.47425 * 60.00242 * 22 9 7 25 25 F 1.39901 * 109.47445 * 180.02562 * 22 9 7 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00455 * 24.99885 * 11 9 7 28 28 H 1.08996 * 117.49933 * 0.02562 * 16 14 12 29 29 H 1.09002 * 117.51705 * 214.97257 * 16 14 12 30 30 H 0.96700 * 116.99907 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5572 -0.8897 11 7 2.2029 -3.6127 0.0018 12 6 1.8371 -4.8126 -0.4913 13 8 0.7200 -4.9703 -0.9364 14 6 2.8165 -5.9578 -0.4906 15 1 3.1673 -6.2761 0.4912 16 6 2.6439 -7.0357 -1.5626 17 6 3.8047 -6.0433 -1.6555 18 1 4.8055 -6.4176 -1.4407 19 6 3.7243 -4.9752 -2.7157 20 8 2.6537 -4.6687 -3.1845 21 8 4.8421 -4.3644 -3.1391 22 6 0.3708 -2.5799 1.2494 23 9 1.1747 -2.5056 2.3920 24 9 -0.5383 -1.5166 1.2489 25 9 -0.3283 -3.7917 1.2498 26 1 -0.4850 0.8400 -0.0004 27 1 3.0965 -3.4865 0.3574 28 1 1.8222 -6.9162 -2.2687 29 1 2.8812 -8.0632 -1.2866 30 1 4.7405 -3.6862 -3.8208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899835888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -236.146955 kcal Electronic energy + Delta-G solvation = -23362.671148 eV Core-core repulsion = 19130.833725 eV Total energy + Delta-G solvation = -4231.837423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.34688 -46.00148 -45.60809 -40.56351 -38.90199 -36.50318 -35.56757 -34.57015 -32.53941 -28.63857 -25.76250 -24.63775 -23.92548 -21.25401 -20.67683 -19.65785 -18.37773 -17.53278 -16.85832 -16.80631 -16.59252 -16.06500 -15.54943 -15.35907 -14.96031 -14.84454 -14.26945 -13.50383 -13.14415 -12.90949 -12.76938 -12.47124 -12.39629 -12.27332 -11.99852 -11.93079 -11.80335 -11.46090 -11.23103 -10.90968 -10.84515 -10.76026 -10.71722 -10.41968 -10.36254 -9.67640 -9.24631 -8.71875 -8.25752 -6.22989 -4.47158 2.09584 2.96296 3.13534 3.19505 3.23992 3.25622 3.56766 3.90342 4.20358 4.51871 4.56944 4.68938 4.93442 4.94199 5.19202 5.33015 5.61498 5.69245 5.86180 5.88226 6.03838 6.22264 6.62189 6.96090 7.17326 7.47238 7.63539 8.02448 8.30986 8.49657 8.88652 9.20287 10.68679 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.007480 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.500370 B = 3742.277852 C = 4739.833411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.247 3.753 10 H 0.085 0.915 11 N -0.708 5.708 12 C 0.530 3.470 13 O -0.515 6.515 14 C -0.150 4.150 15 H 0.141 0.859 16 C -0.113 4.113 17 C -0.154 4.154 18 H 0.140 0.860 19 C 0.496 3.504 20 O -0.488 6.488 21 O -0.516 6.516 22 C 0.417 3.583 23 F -0.210 7.210 24 F -0.136 7.136 25 F -0.218 7.218 26 H 0.269 0.731 27 H 0.397 0.603 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.276 -9.365 -1.402 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.141 3.859 10 H 0.103 0.897 11 N -0.358 5.358 12 C 0.314 3.686 13 O -0.390 6.390 14 C -0.172 4.172 15 H 0.159 0.841 16 C -0.150 4.150 17 C -0.174 4.174 18 H 0.158 0.842 19 C 0.337 3.663 20 O -0.374 6.374 21 O -0.328 6.328 22 C 0.361 3.639 23 F -0.191 7.191 24 F -0.118 7.118 25 F -0.200 7.200 26 H 0.079 0.921 27 H 0.231 0.769 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.961 -9.542 -1.542 12.522 hybrid contribution 0.741 1.401 0.139 1.591 sum 8.701 -8.141 -1.403 11.998 Atomic orbital electron populations 1.70392 1.05856 1.27469 1.43517 1.25086 0.95165 1.00110 0.94072 0.86270 0.79335 0.81346 0.78869 1.19831 1.20834 1.19810 1.20810 0.93652 0.88126 1.56250 0.90617 1.19711 0.88734 0.85736 0.91682 0.89706 1.45987 1.17132 1.10379 1.62265 1.19395 0.87748 0.83084 0.78374 1.90711 1.20938 1.82526 1.44826 1.22484 0.98973 0.99757 0.95937 0.84086 1.23119 0.97446 0.94335 1.00132 1.21729 0.98766 0.99702 0.97167 0.84248 1.22184 0.81473 0.80990 0.81641 1.90855 1.29737 1.61859 1.54924 1.84425 1.37718 1.53164 1.57496 1.23146 0.80900 0.72797 0.87084 1.92985 1.74449 1.96190 1.55522 1.93404 1.68387 1.53770 1.96193 1.93067 1.81522 1.48419 1.96976 0.92051 0.76901 0.86285 0.86434 0.72817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.40 9.50 55.43 0.53 -22.87 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.29 8.46 -34.44 -0.29 -14.58 16 8 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 9 C 0.25 6.29 2.21 -69.08 -0.15 6.14 16 10 H 0.09 2.48 7.58 -51.93 -0.39 2.08 16 11 N -0.71 -14.80 4.98 -54.93 -0.27 -15.07 16 12 C 0.53 10.64 5.18 -10.99 -0.06 10.58 16 13 O -0.52 -12.55 15.12 5.56 0.08 -12.47 16 14 C -0.15 -2.05 6.18 -91.77 -0.57 -2.62 16 15 H 0.14 1.45 8.14 -51.92 -0.42 1.03 16 16 C -0.11 -1.32 9.56 -26.73 -0.26 -1.58 16 17 C -0.15 -1.81 6.30 -91.77 -0.58 -2.38 16 18 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.50 7.37 7.61 36.01 0.27 7.64 16 20 O -0.49 -9.47 15.89 -19.02 -0.30 -9.77 16 21 O -0.52 -6.15 13.42 -39.26 -0.53 -6.68 16 22 C 0.42 10.88 2.81 37.16 0.10 10.99 16 23 F -0.21 -5.20 16.94 2.25 0.04 -5.17 16 24 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 25 F -0.22 -5.63 15.68 2.25 0.04 -5.60 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.40 7.16 8.54 -40.82 -0.35 6.81 16 28 H 0.12 1.73 7.62 -51.93 -0.40 1.33 16 29 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.41 3.55 9.10 45.56 0.41 3.96 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -34.12 282.13 -4.31 -38.43 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -1.53 Total: 7.69 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: -1.62 Total: 15.80 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.25 Total: -37.94 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.75 Total: -28.92 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.12 -4.31 -38.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899835888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.719 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds