Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00255 * 2 1 4 4 H 1.48496 * 109.47286 * 239.99892 * 3 2 1 5 5 H 1.48506 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47400 * 119.99971 * 3 2 1 7 7 C 1.37879 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00087 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47359 * 60.00401 * 9 7 2 11 11 N 1.46504 * 109.46910 * 180.02562 * 9 7 2 12 12 C 1.34780 * 119.99794 * 205.00052 * 11 9 7 13 13 O 1.21282 * 120.00242 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99809 * 179.97438 * 12 11 9 15 15 H 1.09009 * 115.56304 * 61.51247 * 14 12 11 16 16 C 1.53003 * 117.49889 * 207.19937 * 14 12 11 17 17 C 1.52999 * 117.50457 * 275.82266 * 14 12 11 18 18 H 1.08994 * 117.52253 * 145.02507 * 17 14 12 19 19 C 1.50703 * 117.49312 * 0.02562 * 17 14 12 20 20 O 1.20831 * 119.99958 * 312.78159 * 19 17 14 21 21 O 1.34232 * 119.99810 * 132.77815 * 19 17 14 22 22 C 1.52995 * 109.47209 * 299.99886 * 9 7 2 23 23 F 1.39901 * 109.47211 * 299.99972 * 22 9 7 24 24 F 1.39899 * 109.47425 * 60.00242 * 22 9 7 25 25 F 1.39901 * 109.47445 * 180.02562 * 22 9 7 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00455 * 24.99885 * 11 9 7 28 28 H 1.08996 * 117.49933 * 0.02562 * 16 14 12 29 29 H 1.09002 * 117.51705 * 214.97257 * 16 14 12 30 30 H 0.96700 * 116.99907 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5572 -0.8897 11 7 2.2029 -3.6127 0.0018 12 6 1.8371 -4.8126 -0.4913 13 8 0.7200 -4.9703 -0.9364 14 6 2.8165 -5.9578 -0.4906 15 1 3.1673 -6.2761 0.4912 16 6 2.6439 -7.0357 -1.5626 17 6 3.8047 -6.0433 -1.6555 18 1 4.8055 -6.4176 -1.4407 19 6 3.7243 -4.9752 -2.7157 20 8 2.6537 -4.6687 -3.1845 21 8 4.8421 -4.3644 -3.1391 22 6 0.3708 -2.5799 1.2494 23 9 1.1747 -2.5056 2.3920 24 9 -0.5383 -1.5166 1.2489 25 9 -0.3283 -3.7917 1.2498 26 1 -0.4850 0.8400 -0.0004 27 1 3.0965 -3.4865 0.3574 28 1 1.8222 -6.9162 -2.2687 29 1 2.8812 -8.0632 -1.2866 30 1 4.7405 -3.6862 -3.8208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899835888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -262.428383 kcal Electronic energy + Delta-G solvation = -23363.810796 eV Core-core repulsion = 19130.833725 eV Total energy + Delta-G solvation = -4232.977071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.45926 -48.08972 -47.76865 -41.77431 -40.36179 -37.66212 -36.79773 -36.37514 -34.47022 -30.54419 -26.92586 -26.61694 -25.32420 -23.04115 -21.81047 -21.17912 -19.69005 -19.05210 -18.90149 -18.70474 -18.41895 -17.76965 -16.99830 -16.77806 -16.67269 -16.05103 -15.84787 -15.04591 -15.00645 -14.80609 -14.52519 -14.47625 -14.33340 -14.08171 -13.99108 -13.84968 -13.11817 -12.94483 -12.80470 -12.64365 -12.57744 -12.27568 -11.81909 -11.72368 -11.61541 -11.58814 -10.86487 -10.71115 -10.09034 -8.24185 -6.56068 0.94473 1.43171 1.46121 1.54856 1.66297 1.94242 2.19815 2.36471 2.48751 2.77485 2.90910 3.50793 3.64729 3.69365 3.79093 3.87417 4.15802 4.26895 4.35905 4.75426 4.85139 4.90322 5.09847 5.38078 5.51158 5.61378 5.62688 6.48090 6.68597 6.98273 7.13368 7.35415 8.68607 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.007480 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.500370 B = 3742.277852 C = 4739.833411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.012 3.988 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.254 3.746 10 H 0.035 0.965 11 N -0.703 5.703 12 C 0.520 3.480 13 O -0.569 6.569 14 C -0.159 4.159 15 H 0.187 0.813 16 C -0.105 4.105 17 C -0.137 4.137 18 H 0.192 0.808 19 C 0.490 3.510 20 O -0.547 6.547 21 O -0.504 6.504 22 C 0.415 3.585 23 F -0.200 7.200 24 F -0.151 7.151 25 F -0.219 7.219 26 H 0.269 0.731 27 H 0.413 0.587 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.428 -10.230 -0.660 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.147 3.853 10 H 0.053 0.947 11 N -0.354 5.354 12 C 0.307 3.693 13 O -0.447 6.447 14 C -0.180 4.180 15 H 0.204 0.796 16 C -0.142 4.142 17 C -0.155 4.155 18 H 0.209 0.791 19 C 0.334 3.666 20 O -0.437 6.437 21 O -0.317 6.317 22 C 0.359 3.641 23 F -0.182 7.182 24 F -0.132 7.132 25 F -0.201 7.201 26 H 0.079 0.921 27 H 0.249 0.751 28 H 0.100 0.900 29 H 0.187 0.813 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 11.187 -10.427 -0.795 15.313 hybrid contribution -0.251 1.646 -0.149 1.672 sum 10.935 -8.780 -0.944 14.056 Atomic orbital electron populations 1.70540 1.07610 1.28265 1.44591 1.26069 0.95943 1.03910 0.93405 0.85187 0.78005 0.76530 0.79475 1.18722 1.20931 1.18662 1.21166 0.94421 0.88313 1.55905 0.89042 1.19223 0.88960 0.87747 0.89401 0.94685 1.45877 1.16998 1.09880 1.62672 1.20568 0.88337 0.83964 0.76390 1.90681 1.23828 1.83481 1.46730 1.22508 0.98677 0.97833 0.98971 0.79581 1.23292 0.96358 0.96513 0.98040 1.22042 1.00939 0.98150 0.94415 0.79063 1.22981 0.80987 0.81074 0.81600 1.90855 1.31922 1.63806 1.57124 1.84404 1.36319 1.53250 1.57702 1.23221 0.80824 0.72363 0.87682 1.92986 1.74076 1.96144 1.54984 1.93374 1.68988 1.54545 1.96316 1.93058 1.81634 1.48390 1.97023 0.92146 0.75074 0.90043 0.81287 0.71325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.07 9.50 21.45 0.20 -49.87 16 2 C 0.01 0.63 5.20 84.66 0.44 1.07 16 3 Si 0.99 41.14 29.54 68.60 2.03 43.17 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.56 -29.16 8.46 25.60 0.22 -28.95 16 8 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 9 C 0.25 13.31 2.21 44.24 0.10 13.41 16 10 H 0.04 2.19 7.58 -2.39 -0.02 2.17 16 11 N -0.70 -29.34 4.98 -446.09 -2.22 -31.57 16 12 C 0.52 20.87 5.18 87.65 0.45 21.32 16 13 O -0.57 -28.88 15.12 -3.04 -0.05 -28.92 16 14 C -0.16 -3.87 6.18 -11.54 -0.07 -3.95 16 15 H 0.19 2.86 8.14 -2.38 -0.02 2.84 16 16 C -0.11 -2.15 9.56 30.60 0.29 -1.86 16 17 C -0.14 -2.68 6.30 -11.54 -0.07 -2.76 16 18 H 0.19 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.49 13.85 7.61 71.24 0.54 14.40 16 20 O -0.55 -21.77 15.89 22.20 0.35 -21.42 16 21 O -0.50 -10.89 13.42 -51.43 -0.69 -11.58 16 22 C 0.42 22.16 2.81 71.98 0.20 22.36 16 23 F -0.20 -9.88 16.94 44.97 0.76 -9.12 16 24 F -0.15 -8.78 12.91 44.97 0.58 -8.20 16 25 F -0.22 -11.64 15.68 44.97 0.70 -10.94 16 26 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.41 14.27 8.54 -92.71 -0.79 13.48 16 28 H 0.08 2.36 7.62 -2.39 -0.02 2.34 16 29 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.43 6.72 9.10 -74.06 -0.67 6.05 16 Total: -1.00 -79.02 282.13 3.54 -75.48 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.23 Total: 17.91 kcal Atomic # 6 Polarization: 32.94 SS G_CDS: 2.10 Total: 35.05 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.02 Total: -81.43 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -0.38 Total: -61.92 kcal Atomic # 9 Polarization: -30.30 SS G_CDS: 2.05 Total: -28.25 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -79.02 3.54 -75.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899835888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.950 kcal (2) G-P(sol) polarization free energy of solvation -79.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds