Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00328 * 0.02562 * 12 11 10 14 14 C 1.47620 * 119.99709 * 180.02562 * 12 11 10 15 15 C 1.39557 * 120.50393 * 0.02562 * 14 12 11 16 16 N 1.31638 * 120.62750 * 180.02562 * 15 14 12 17 17 C 1.32431 * 121.80329 * 0.02562 * 16 15 14 18 18 O 1.35489 * 119.52910 * 179.97438 * 17 16 15 19 19 C 1.39129 * 120.94379 * 359.97438 * 17 16 15 20 20 N 1.48026 * 120.36174 * 180.02562 * 19 17 16 21 21 O 1.21799 * 119.99448 * 179.97438 * 20 19 17 22 22 O 1.21794 * 120.00320 * 0.02562 * 20 19 17 23 23 C 1.37990 * 119.26749 * 359.76571 * 19 17 16 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.68253 * 0.02562 * 15 14 12 31 31 H 0.96700 * 114.00459 * 89.99680 * 18 17 16 32 32 H 1.08005 * 120.82331 * 180.25400 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4026 -6.0980 0.0023 14 6 1.4487 -7.3764 0.0018 15 6 0.0531 -7.3886 0.0007 16 7 -0.6075 -8.5272 0.0012 17 6 0.0157 -9.6957 0.0034 18 8 -0.7103 -10.8397 0.0044 19 6 1.4052 -9.7654 0.0046 20 7 2.0885 -11.0786 0.0064 21 8 3.3053 -11.1318 0.0070 22 8 1.4340 -12.1057 0.0064 23 6 2.1393 -8.5970 -0.0013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.5429 -4.9308 0.0011 30 1 -0.4899 -6.4551 -0.0007 31 1 -0.9204 -11.1731 -0.8787 32 1 3.2190 -8.6218 -0.0046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278133632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -43.884562 kcal Electronic energy + Delta-G solvation = -20691.463893 eV Core-core repulsion = 17042.113084 eV Total energy + Delta-G solvation = -3649.350809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.67571 -41.25682 -39.52643 -37.83393 -36.75785 -35.32335 -33.77912 -33.14134 -31.91561 -29.69307 -27.22339 -25.66958 -24.18751 -23.90286 -21.47115 -21.07661 -19.96231 -19.27461 -19.16212 -17.97876 -17.79726 -17.30188 -16.54131 -16.48783 -15.43711 -15.34008 -14.79179 -14.56064 -14.07718 -13.85247 -13.72335 -13.18716 -12.69139 -12.41789 -11.86979 -11.81078 -11.42258 -11.37273 -11.18859 -11.13503 -10.79258 -10.64804 -10.55053 -10.16482 -10.01741 -9.73575 -9.39300 -8.86960 -8.53502 -6.21412 -4.24921 -0.81098 -0.14007 0.79535 0.87468 2.17932 2.56242 2.97224 3.11264 3.20993 3.29460 3.33993 3.50214 3.84419 3.96033 4.11964 4.30851 4.37309 4.83824 5.10325 5.16366 5.22613 5.92131 6.06359 6.11268 6.42686 6.52197 6.54957 6.79228 7.28835 7.31568 7.42537 7.54066 7.75766 8.04962 8.18087 8.80874 9.41048 10.90074 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041724 B = 0.002947 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.919292 B = 9497.834628 C =10145.755590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.011 3.989 10 C 0.120 3.880 11 N -0.708 5.708 12 C 0.555 3.445 13 O -0.530 6.530 14 C -0.186 4.186 15 C 0.208 3.792 16 N -0.488 5.488 17 C 0.407 3.593 18 O -0.454 6.454 19 C -0.128 4.128 20 N 0.036 4.964 21 O -0.158 6.158 22 O -0.133 6.133 23 C 0.058 3.942 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.397 0.603 30 H 0.190 0.810 31 H 0.419 0.581 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -18.375 -1.801 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.358 5.358 12 C 0.339 3.661 13 O -0.408 6.408 14 C -0.193 4.193 15 C 0.050 3.950 16 N -0.207 5.207 17 C 0.225 3.775 18 O -0.264 6.264 19 C -0.215 4.215 20 N 0.557 4.443 21 O -0.372 6.372 22 O -0.353 6.353 23 C 0.031 3.969 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.206 0.794 31 H 0.282 0.718 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.809 -17.580 -1.220 17.845 hybrid contribution 0.772 0.542 -0.421 1.033 sum -2.037 -17.039 -1.641 17.238 Atomic orbital electron populations 1.69946 1.06109 1.26974 1.50113 1.24991 0.94908 0.99507 0.94804 0.86445 0.80166 0.83202 0.77705 1.19536 1.20873 1.20873 1.21044 0.93317 0.90198 1.51721 0.92085 1.19358 0.94176 0.91042 0.98050 1.21911 0.96220 0.80532 1.01499 1.46302 1.10600 1.06426 1.72449 1.17596 0.87264 0.82924 0.78350 1.90835 1.12802 1.87119 1.50022 1.21293 0.94857 0.95218 1.07904 1.23472 0.90457 0.96298 0.84807 1.67737 1.39618 0.97250 1.16123 1.19077 0.84177 0.87196 0.87059 1.84753 1.72998 1.33925 1.34719 1.22402 0.93090 0.85646 1.20383 1.43177 1.01099 1.02001 0.98034 1.94602 0.95161 1.93630 1.53760 1.94573 1.66164 1.22421 1.52177 1.21618 1.03565 0.87953 0.83730 0.92766 0.95762 0.95743 0.91830 0.91840 0.76759 0.79353 0.71790 0.80039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.61 9.11 -34.44 -0.31 -13.93 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.22 5.61 -4.04 -0.02 2.19 16 11 N -0.71 -10.04 5.51 -61.32 -0.34 -10.38 16 12 C 0.56 7.77 7.77 -12.43 -0.10 7.68 16 13 O -0.53 -9.37 16.41 5.29 0.09 -9.28 16 14 C -0.19 -1.97 5.89 -104.82 -0.62 -2.59 16 15 C 0.21 1.81 10.71 -17.14 -0.18 1.62 16 16 N -0.49 -4.68 10.37 -12.97 -0.13 -4.81 16 17 C 0.41 3.91 7.73 -16.96 -0.13 3.78 16 18 O -0.45 -3.70 11.57 -40.24 -0.47 -4.17 16 19 C -0.13 -1.34 6.88 -79.70 -0.55 -1.89 16 20 N 0.04 0.43 4.45 34.08 0.15 0.58 16 21 O -0.16 -2.06 18.51 -29.46 -0.55 -2.60 16 22 O -0.13 -1.58 17.26 -36.48 -0.63 -2.21 16 23 C 0.06 0.61 9.20 -38.92 -0.36 0.25 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 4.46 6.53 -40.82 -0.27 4.19 16 30 H 0.19 1.14 6.41 -52.49 -0.34 0.80 16 31 H 0.42 1.34 9.06 45.56 0.41 1.75 16 32 H 0.18 1.94 7.36 -52.48 -0.39 1.55 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -32.09 299.65 -5.96 -38.05 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -1.81 Total: 0.21 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.42 Total: -38.68 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.55 Total: -18.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.09 -5.96 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278133632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.836 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds