Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00328 * 0.02562 * 12 11 10 14 14 C 1.47620 * 119.99709 * 180.02562 * 12 11 10 15 15 C 1.39557 * 120.50393 * 0.02562 * 14 12 11 16 16 N 1.31638 * 120.62750 * 180.02562 * 15 14 12 17 17 C 1.32431 * 121.80329 * 0.02562 * 16 15 14 18 18 O 1.35489 * 119.52910 * 179.97438 * 17 16 15 19 19 C 1.39129 * 120.94379 * 359.97438 * 17 16 15 20 20 N 1.48026 * 120.36174 * 180.02562 * 19 17 16 21 21 O 1.21799 * 119.99448 * 179.97438 * 20 19 17 22 22 O 1.21794 * 120.00320 * 0.02562 * 20 19 17 23 23 C 1.37990 * 119.26749 * 359.76571 * 19 17 16 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.68253 * 0.02562 * 15 14 12 31 31 H 0.96700 * 114.00459 * 89.99680 * 18 17 16 32 32 H 1.08005 * 120.82331 * 180.25400 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4026 -6.0980 0.0023 14 6 1.4487 -7.3764 0.0018 15 6 0.0531 -7.3886 0.0007 16 7 -0.6075 -8.5272 0.0012 17 6 0.0157 -9.6957 0.0034 18 8 -0.7103 -10.8397 0.0044 19 6 1.4052 -9.7654 0.0046 20 7 2.0885 -11.0786 0.0064 21 8 3.3053 -11.1318 0.0070 22 8 1.4340 -12.1057 0.0064 23 6 2.1393 -8.5970 -0.0013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.5429 -4.9308 0.0011 30 1 -0.4899 -6.4551 -0.0007 31 1 -0.9204 -11.1731 -0.8787 32 1 3.2190 -8.6218 -0.0046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278133632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -68.673817 kcal Electronic energy + Delta-G solvation = -20692.538835 eV Core-core repulsion = 17042.113084 eV Total energy + Delta-G solvation = -3650.425751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.55927 -42.13354 -40.62207 -38.62015 -37.66658 -36.77240 -34.96297 -34.57758 -32.99536 -31.25481 -28.11604 -27.13277 -25.42879 -24.76869 -23.01481 -22.26730 -20.79916 -20.18752 -20.05071 -18.87938 -18.83069 -18.41455 -18.12511 -17.30806 -16.66193 -16.64278 -16.46897 -15.63066 -15.12508 -15.01181 -14.76923 -14.34953 -14.28751 -13.38523 -13.21361 -12.96720 -12.80378 -12.75733 -12.53124 -12.38352 -12.26883 -11.96431 -11.80887 -11.54230 -11.36623 -11.05554 -10.86565 -10.60047 -10.14211 -8.23541 -6.32520 -1.63259 -0.98987 -0.08157 0.01189 1.29018 1.41555 1.44206 1.55421 1.80913 1.86010 2.13854 2.42322 2.71522 2.98986 3.12519 3.14355 3.33570 3.54508 3.97167 4.28654 4.43805 4.50655 4.53210 4.87389 5.02476 5.12595 5.47654 5.60987 5.79551 5.85867 6.16719 6.23798 6.33395 6.37330 6.80889 6.98475 7.36974 8.88066 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041724 B = 0.002947 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.919292 B = 9497.834628 C =10145.755590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.139 3.861 11 N -0.701 5.701 12 C 0.563 3.437 13 O -0.570 6.570 14 C -0.192 4.192 15 C 0.231 3.769 16 N -0.493 5.493 17 C 0.425 3.575 18 O -0.458 6.458 19 C -0.136 4.136 20 N 0.037 4.963 21 O -0.195 6.195 22 O -0.120 6.120 23 C 0.064 3.936 24 H 0.265 0.735 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.414 0.586 30 H 0.219 0.781 31 H 0.441 0.559 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -18.739 -1.908 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.018 4.018 10 C 0.016 3.984 11 N -0.352 5.352 12 C 0.349 3.651 13 O -0.450 6.450 14 C -0.198 4.198 15 C 0.073 3.927 16 N -0.212 5.212 17 C 0.243 3.757 18 O -0.272 6.272 19 C -0.224 4.224 20 N 0.556 4.444 21 O -0.400 6.400 22 O -0.346 6.346 23 C 0.037 3.963 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.252 0.748 30 H 0.235 0.765 31 H 0.309 0.691 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.767 -17.963 -1.347 18.403 hybrid contribution 0.957 0.553 -0.394 1.173 sum -2.810 -17.410 -1.740 17.721 Atomic orbital electron populations 1.70033 1.07355 1.27857 1.51150 1.25780 0.95729 1.02823 0.94609 0.85484 0.79087 0.79271 0.77739 1.19025 1.20451 1.20512 1.21496 0.93638 0.91953 1.51208 0.92296 1.19175 0.94298 0.91406 0.96923 1.21368 0.95135 0.81220 1.00692 1.45984 1.11316 1.05240 1.72622 1.17867 0.86797 0.83577 0.76866 1.90822 1.14716 1.87739 1.51728 1.20833 0.95360 0.93195 1.10430 1.23864 0.89532 0.97193 0.82146 1.67913 1.39176 0.97266 1.16881 1.19150 0.83782 0.87724 0.85032 1.84705 1.72529 1.33320 1.36659 1.22353 0.93358 0.84683 1.21958 1.43331 1.00979 1.02455 0.97633 1.94614 0.95739 1.93922 1.55744 1.94545 1.65961 1.23011 1.51099 1.21570 1.03470 0.88183 0.83063 0.92606 0.96688 0.96768 0.92663 0.92786 0.74837 0.76521 0.69117 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.25 13.29 21.45 0.28 -50.97 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.96 41.66 29.54 68.60 2.03 43.68 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -28.27 9.11 25.60 0.23 -28.03 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.02 0.87 5.09 29.85 0.15 1.02 16 10 C 0.14 5.10 5.61 86.38 0.48 5.59 16 11 N -0.70 -19.02 5.51 -466.18 -2.57 -21.59 16 12 C 0.56 15.23 7.77 86.72 0.67 15.91 16 13 O -0.57 -20.13 16.41 -3.97 -0.07 -20.19 16 14 C -0.19 -3.75 5.89 -19.99 -0.12 -3.87 16 15 C 0.23 3.35 10.71 85.04 0.91 4.27 16 16 N -0.49 -7.95 10.37 -307.83 -3.19 -11.15 16 17 C 0.43 7.08 7.73 84.82 0.66 7.74 16 18 O -0.46 -6.16 11.57 -66.78 -0.77 -6.93 16 19 C -0.14 -2.65 6.88 36.53 0.25 -2.40 16 20 N 0.04 0.86 4.45 -46.09 -0.21 0.66 16 21 O -0.20 -5.12 18.51 18.89 0.35 -4.77 16 22 O -0.12 -2.68 17.26 25.60 0.44 -2.24 16 23 C 0.06 1.29 9.20 22.70 0.21 1.50 16 24 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.41 8.44 6.53 -92.71 -0.60 7.83 16 30 H 0.22 1.81 6.41 -2.91 -0.02 1.79 16 31 H 0.44 1.45 9.06 -74.06 -0.67 0.78 16 32 H 0.18 3.79 7.36 -2.91 -0.02 3.77 16 Total: -1.00 -68.09 299.65 0.15 -67.94 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -0.07 Total: 2.86 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 3.91 Total: 2.69 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -5.68 Total: -83.05 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.05 Total: -34.13 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.09 0.15 -67.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278133632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.729 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds