Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30861 * 125.88731 * 2 1 4 4 C 1.33694 * 109.77156 * 180.02562 * 3 2 1 5 5 S 1.76204 * 125.61857 * 179.97438 * 4 3 2 6 6 C 1.81399 * 102.99728 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47053 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00254 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00425 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00503 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99890 * 322.48221 * 10 9 7 12 12 C 1.38948 * 119.99942 * 142.47862 * 10 9 7 13 13 N 1.31417 * 119.99764 * 157.59140 * 12 10 9 14 14 Si 1.86795 * 120.00247 * 337.58240 * 12 10 9 15 15 H 1.48501 * 109.46951 * 95.70842 * 14 12 10 16 16 H 1.48495 * 109.47426 * 215.70777 * 14 12 10 17 17 H 1.48506 * 109.47170 * 335.70969 * 14 12 10 18 18 C 1.46504 * 119.99832 * 0.02562 * 9 7 6 19 19 C 1.47205 * 109.46840 * 83.78784 * 18 9 7 20 20 N 7.68880 * 157.91468 * 237.79952 * 2 1 3 21 21 N 1.31252 * 108.76109 * 0.22602 * 4 3 2 22 22 N 1.34352 * 125.88589 * 180.02562 * 2 1 3 23 23 H 0.97000 * 126.75305 * 0.02562 * 22 2 1 24 24 H 1.08997 * 109.47628 * 89.97591 * 1 2 3 25 25 H 1.09000 * 109.47206 * 209.97952 * 1 2 3 26 26 H 1.09004 * 109.47084 * 329.97594 * 1 2 3 27 27 H 1.09000 * 109.47205 * 300.00104 * 6 5 4 28 28 H 1.09003 * 109.47159 * 60.00221 * 6 5 4 29 29 H 0.97001 * 119.99540 * 180.02562 * 13 12 10 30 30 H 1.08993 * 109.47451 * 203.79203 * 18 9 7 31 31 H 1.09006 * 109.47208 * 323.79486 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6452 -0.0027 7 6 7.6378 1.4392 -0.0042 8 8 7.5999 2.6516 -0.0039 9 7 8.8255 0.8022 -0.0048 10 6 9.9908 1.5245 -0.0056 11 1 10.0586 2.4395 -0.5754 12 6 11.0845 1.0794 0.7267 13 7 12.2952 1.4789 0.4080 14 14 10.8340 -0.0867 2.1644 15 1 11.0377 -1.4852 1.7086 16 1 11.8112 0.2319 3.2362 17 1 9.4540 0.0663 2.6912 18 6 8.8714 -0.6621 -0.0046 19 6 8.7358 -1.1574 -1.3842 20 7 8.6316 -1.5405 -2.4462 21 7 3.6191 -0.6220 -0.0058 22 7 2.2945 -1.0885 -0.0005 23 1 2.0051 -2.0143 -0.0012 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 6.3195 0.0169 0.8872 28 1 6.3181 0.0173 -0.8928 29 1 13.0588 1.1679 0.9190 30 1 9.8228 -0.9958 0.4094 31 1 8.0543 -1.0512 0.6030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342726601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = 100.741618 kcal Electronic energy + Delta-G solvation = -18743.144580 eV Core-core repulsion = 15575.110855 eV Total energy + Delta-G solvation = -3168.033725 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14800 -39.18711 -36.39455 -34.85426 -33.12590 -32.54646 -32.37349 -29.85926 -28.30131 -27.85675 -24.76258 -23.22678 -21.28592 -19.58107 -18.69889 -18.20024 -16.90966 -16.51776 -16.37293 -15.99198 -15.51504 -14.79582 -14.64630 -13.92624 -13.67457 -13.55187 -13.41571 -13.21957 -13.08889 -12.67475 -12.55799 -12.08344 -12.03445 -11.98641 -11.62632 -10.97362 -10.74104 -10.65265 -10.53226 -10.10952 -10.02898 -9.89495 -9.37999 -8.97295 -8.18720 -7.54097 -6.58787 -4.21240 1.18723 1.34534 2.13491 2.62162 2.74987 2.83870 2.95448 3.03967 3.09813 3.18639 3.35966 3.94947 4.01175 4.15884 4.37526 4.51697 4.80048 4.99653 5.07133 5.14235 5.20035 5.35797 5.38049 5.53361 5.65501 5.72686 6.05722 6.82699 7.22534 7.77324 7.88029 7.97544 8.18521 8.66527 9.02540 9.35747 10.52118 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.004409 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.836119 B = 6349.481049 C = 6618.159793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.516 5.516 4 C 0.199 3.801 5 S 0.107 5.893 6 C -0.156 4.156 7 C 0.492 3.508 8 O -0.529 6.529 9 N -0.452 5.452 10 C -0.325 4.325 11 H 0.114 0.886 12 C 0.065 3.935 13 N -0.848 5.848 14 Si 0.859 3.141 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.254 1.254 18 C 0.177 3.823 19 C 0.204 3.796 20 N -0.436 5.436 21 N -0.324 5.324 22 N -0.482 5.482 23 H 0.439 0.561 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.279 0.721 30 H 0.118 0.882 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -8.493 3.518 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 N -0.247 5.247 4 C -0.190 4.190 5 S 0.333 5.667 6 C -0.309 4.309 7 C 0.278 3.722 8 O -0.407 6.407 9 N -0.176 5.176 10 C -0.452 4.452 11 H 0.131 0.869 12 C -0.143 4.143 13 N -0.482 5.482 14 Si 0.684 3.316 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.178 1.178 18 C 0.049 3.951 19 C -0.115 4.115 20 N -0.114 5.114 21 N -0.158 5.158 22 N -0.202 5.202 23 H 0.284 0.716 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.516 -7.263 1.981 19.988 hybrid contribution -0.182 -2.803 1.144 3.033 sum -18.699 -10.065 3.125 21.464 Atomic orbital electron populations 1.20401 0.83432 1.05071 1.04648 1.24487 0.96641 0.82764 0.95391 1.70567 0.99571 1.28901 1.25676 1.26785 0.98381 0.93353 1.00516 1.86498 0.87382 1.01338 1.91499 1.23970 0.96353 1.03040 1.07490 1.19290 0.83046 0.87988 0.81870 1.90648 1.85702 1.13035 1.51346 1.43473 1.05872 1.01918 1.66305 1.19084 0.86005 1.09648 1.30454 0.86887 1.25373 0.94671 0.97343 0.96880 1.69743 0.98108 1.42906 1.37459 0.87214 0.80231 0.80290 0.83866 1.19574 1.20325 1.17778 1.19619 1.05341 0.84726 0.85375 1.29854 0.92700 0.93116 0.95823 1.80981 1.09426 1.09108 1.11926 1.78403 0.96930 1.10680 1.29792 1.47834 1.04336 1.09866 1.58120 0.71591 0.88894 0.89837 0.88174 0.86799 0.87475 0.91084 0.86450 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.00 0.38 0.00 16 2 C 0.29 3.04 8.23 -155.74 -1.28 1.76 16 3 N -0.52 -7.70 11.21 -10.96 -0.12 -7.82 16 4 C 0.20 3.22 8.28 -90.96 -0.75 2.47 16 5 S 0.11 1.86 21.30 -107.50 -2.29 -0.43 16 6 C -0.16 -2.67 4.65 36.00 0.17 -2.51 16 7 C 0.49 10.62 7.58 -10.99 -0.08 10.54 16 8 O -0.53 -13.28 15.73 5.54 0.09 -13.19 16 9 N -0.45 -9.99 2.15 -117.93 -0.25 -10.24 16 10 C -0.33 -8.48 9.36 -14.94 -0.14 -8.62 16 11 H 0.11 3.36 7.91 -52.48 -0.42 2.94 16 12 C 0.07 1.66 5.26 -17.47 -0.09 1.56 16 13 N -0.85 -22.87 13.96 55.50 0.77 -22.09 16 14 Si 0.86 17.74 25.05 -169.99 -4.26 13.48 16 15 H -0.27 -5.02 6.69 56.52 0.38 -4.65 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 17 H -0.25 -5.00 7.11 56.52 0.40 -4.60 16 18 C 0.18 3.15 4.27 -6.82 -0.03 3.12 16 19 C 0.20 3.84 14.99 -20.83 -0.31 3.53 16 20 N -0.44 -8.81 18.52 42.07 0.78 -8.04 16 21 N -0.32 -4.81 12.36 30.13 0.37 -4.44 16 22 N -0.48 -5.06 7.43 32.61 0.24 -4.82 16 23 H 0.44 2.76 8.96 -182.35 -1.63 1.12 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.11 1.67 7.42 -51.92 -0.39 1.28 16 28 H 0.11 1.76 7.48 -51.92 -0.39 1.37 16 29 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.12 2.13 3.61 -51.93 -0.19 1.94 16 31 H 0.11 1.47 6.70 -51.93 -0.35 1.13 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -33.74 296.57 -6.13 -39.87 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.78 Total: 1.38 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -2.14 Total: 11.86 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 1.79 Total: -57.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -4.26 Total: 13.48 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.29 Total: -0.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.74 -6.13 -39.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342726601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.611 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds